PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC011230.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 240aa    MW: 26668 Da    PI: 5.1477
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC011230.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.71.5e-14246347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +WT+eE+ +++ + ++lG+g+W+ Iar + ++Rt+ q+ s+ qky
     EcC011230.10  2 PWTEEEHRRFLIGLQKLGKGDWRGIARDFVTTRTPTQVASHAQKY 46
                     8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002491.1E-11146IPR001005SANT/Myb domain
SMARTSM007171.2E-6149IPR001005SANT/Myb domain
PROSITE profilePS5129420.533151IPR017930Myb domain
CDDcd001674.81E-9246No hitNo description
SuperFamilySSF466899.72E-16252IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-16250IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.6E-11244IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0030307Biological Processpositive regulation of cell growth
GO:0046686Biological Processresponse to cadmium ion
GO:0048366Biological Processleaf development
GO:2000469Biological Processnegative regulation of peroxidase activity
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
NPWTEEEHRR FLIGLQKLGK GDWRGIARDF VTTRTPTQVA SHAQKYYIRQ SNAGRRKRRS  60
SLFDMAPDMA TADQPSHPEE TFLPPLVRLN EDTNSTTSAS MGLDLERTPM ETSHPETSEG  120
GGDVAMESSD QVPLVPCYFP YYLPLPFPMW PPNMAPPEDG RVVETSHHRV LKPIPVIPKE  180
PLNIDQIVGM SQLSLAENEP APLSLKFLGE TSRQSAFIKA PSSVNESDLD NCKDGATQAA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00551DAPTransfer from AT5G47390Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010062531.11e-178PREDICTED: myb-like protein H
TrEMBLA0A059BUP71e-176A0A059BUP7_EUCGR; Uncharacterized protein
STRINGXP_010062531.11e-177(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93132735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-38MYB_related family protein