PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC010992.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 122aa MW: 14214.1 Da PI: 8.4441

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC010992.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	106.5	3.3e-33	4	122	1	112
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrF Pt+eelv++yL+ k+eg++ +++vi+ +diy+++P+dLp+ ++ + ++w+fF++r++++ +g r++r t++gyWkatg+ EcC010992.20 4 LPPGFRFFPTEEELVSFYLRSKLEGTRgalhGLIDRVIPVLDIYEFNPSDLPQfagdLCRRDPEQWFFFIPRQESEYRGGRPRRLTTTGYWKATGSP 100 79**********************977642234579999*******646654445677***************************** PP NAM 90 kevlskkgelvglkktLvfykgr 112 v+s +++ vg+k+t+vfy+gr EcC010992.20 101 GFVYS-NNHIVGVKRTMVFYTGR 122 *.999*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.32E-36	3	122	IPR003441	NAC domain
PROSITE profile	PS51005	36.899	4	122	IPR003441	NAC domain
Pfam	PF02365	6.1E-18	5	120	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 122 aa Download sequence Send to blast
MEDLPPGFRF FPTEEELVSF YLRSKLEGTR GALHGLIDRV IPVLDIYEFN PSDLPQFAGD 60 LCRRDPEQWF FFIPRQESEY RGGRPRRLTT TGYWKATGSP GFVYSNNHIV GVKRTMVFYT 120 GR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	7e-24	3	122	14	124	Stress-induced transcription factor NAC1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010024757.1	9e-86	PREDICTED: NAC domain-containing protein 90
Swissprot	Q9FMR3	9e-48	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A059DJF0	2e-84	A0A059DJF0_EUCGR; Uncharacterized protein
STRING	XP_010024757.1	4e-85	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	6e-42	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]