PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC008940.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | SRS | ||||||||
Protein Properties | Length: 219aa MW: 24145.6 Da PI: 7.8969 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 182.2 | 2.2e-56 | 12 | 154 | 4 | 153 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkel 100 +++CqdCGnqak+dC+++RCRtCCks+gf+C+thvkstWvpa++r +r+qq+++ ++ ++ +++r+ + ++ + t+ + + + EcC008940.10 12 SSSRCQDCGNQAKRDCEYRRCRTCCKSKGFHCQTHVKSTWVPAYRRHQRHQQEQQHQHL----LNSVPVHQQRSIQPQNPKRHRDTS---TFPGLGT 101 5679********************************************98887665333....344555555655333333333333...3344444 PP DUF702 101 etsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGle 153 e +lP+evss+a frcvrvs dd + e++aYqt+v+igGh fkGiLydqG++ EcC008940.10 102 E-GNLPAEVSSTATFRCVRVSIEDDdAAEHYAYQTSVNIGGHAFKGILYDQGPD 154 4.56****************9888845566**********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 3.3E-55 | 13 | 154 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 3.0E-27 | 16 | 57 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 4.0E-23 | 105 | 153 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MMMRGQSGMS TSSSRCQDCG NQAKRDCEYR RCRTCCKSKG FHCQTHVKST WVPAYRRHQR 60 HQQEQQHQHL LNSVPVHQQR SIQPQNPKRH RDTSTFPGLG TEGNLPAEVS STATFRCVRV 120 SIEDDDAAEH YAYQTSVNIG GHAFKGILYD QGPDTCYGTA AGESSSGDPT ALPSNNDDNN 180 PAICTLASAS APQESIYPCS YPFPLSASIS GTHYIFPKS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010028633.1 | 1e-165 | PREDICTED: protein SHI RELATED SEQUENCE 3 isoform X1 | ||||
TrEMBL | A0A059ANI6 | 1e-163 | A0A059ANI6_EUCGR; Uncharacterized protein | ||||
STRING | XP_010028633.1 | 1e-164 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75520.1 | 5e-45 | SHI-related sequence 5 |