PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC008470.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 287aa    MW: 31020.7 Da    PI: 8.2358
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC008470.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00023120142123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   ++C+ Cg+sF++   L  H  +H
  EcC008470.20 120 FSCKTCGRSFPSFQALGGHRASH 142
                   89**********99999998887 PP
2zf-C2H213.80.00017203225123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   ++C++Cg  Fs+   L  H+r+H
  EcC008470.20 203 HECSICGAEFSSGQALGGHMRRH 225
                   78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.616120147IPR007087Zinc finger, C2H2
SuperFamilySSF576675.33E-9120142No hitNo description
SMARTSM003550.1120142IPR015880Zinc finger, C2H2-like
PfamPF139121.3E-11120144IPR007087Zinc finger, C2H2
PROSITE patternPS000280122142IPR007087Zinc finger, C2H2
SuperFamilySSF576675.33E-9198225No hitNo description
Gene3DG3DSA:3.30.160.600.001201225IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.7E-13202227IPR007087Zinc finger, C2H2
PROSITE profilePS501579.743203225IPR007087Zinc finger, C2H2
SMARTSM003550.01203225IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280205225IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MTMEVQVSNE SPDRHQTNTD ATTVKFKGKR TRRQRPPSPL ALTMACSSSS DSEARTAITR  60
HKLDDDEDSI PTTTATATVS RHSPESTKEE EEDMANCLIL LARGQGPIAP KDKVEASCTF  120
SCKTCGRSFP SFQALGGHRA SHKKPRLNDE DKNNKPIHVT MKGNDTGDKQ RIVDACTALS  180
LQITPAGGPA MLSSGNKSSN KVHECSICGA EFSSGQALGG HMRRHRPVTS GSGASNTEPE  240
IKKGRQGQGL PDLDLNLPAP ATEEEEREAA TKKEKNHKPI VSILIWL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010050475.10.0PREDICTED: zinc finger protein ZAT5
TrEMBLA0A059DFI50.0A0A059DFI5_EUCGR; Uncharacterized protein
STRINGXP_010050475.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63472745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.16e-38C2H2 family protein