PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC008258.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family Nin-like
Protein Properties Length: 274aa    MW: 30750.8 Da    PI: 5.2791
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC008258.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK80.71.5e-25116164452
        RWP-RK   4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                    +s e++s+yF++pi+ AAkeL+++lT+LK++CR++GI+RWPhRk+ sl
  EcC008258.30 116 MLSREQISRYFYMPITRAAKELNIGLTLLKKRCRELGIRRWPHRKLMSL 164
                   6899******************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.621100184IPR003035RWP-RK domain
PfamPF020424.3E-21117164IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006108Biological Processmalate metabolic process
GO:0009409Biological Processresponse to cold
GO:0009735Biological Processresponse to cytokinin
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0055114Biological Processoxidation-reduction process
GO:0005739Cellular Componentmitochondrion
GO:0005774Cellular Componentvacuolar membrane
GO:0009570Cellular Componentchloroplast stroma
GO:0009941Cellular Componentchloroplast envelope
GO:0010319Cellular Componentstromule
GO:0048046Cellular Componentapoplast
GO:0008746Molecular FunctionNAD(P)+ transhydrogenase activity
GO:0016788Molecular Functionhydrolase activity, acting on ester bonds
GO:0030060Molecular FunctionL-malate dehydrogenase activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
GNGCSALDGN FSLPFDYQES LCEAPPLITS FPLDPLCPQI LDFEHNPHDA IQEGLDVQNY  60
SASGTGIFEE MCARNEPKKR GLLLHNSGQD NYLSEVGGGD KRCAKEQSDS DGNSRMLSRE  120
QISRYFYMPI TRAAKELNIG LTLLKKRCRE LGIRRWPHRK LMSLQTLIKN VQEMGGDPEN  180
VEQLRKVVNL LELEKKIMEE FPDVQLEDKT KRLRQACFKA NYKKRKLVGP MDSGSTSSKS  240
SPTAEDEGMS TGMGYEEDVR SLLFDDSPSC SSTI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018720480.10.0PREDICTED: protein RKD4-like
TrEMBLA0A1Q3AZ303e-65A0A1Q3AZ30_CEPFO; RWP-RK domain-containing protein (Fragment)
STRINGXP_010039062.11e-175(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.14e-51RWP-RK domain-containing protein