PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC007867.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 165aa    MW: 18786 Da    PI: 6.0872
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC007867.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH391.3e-122853126
                  --S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                  y   +C+++ +tG+C yGd CkF+H+
  EcC007867.40 28 YQPDICKDYKETGYCGYGDACKFMHD 53
                  67789********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.1E-92558IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5772755IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-72754IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-122858IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-102853IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.7E-1487146IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578506.25E-14104147No hitNo description
PfamPF139205.0E-9104145No hitNo description
PROSITE profilePS5008910.571105143IPR001841Zinc finger, RING-type
SMARTSM001848.1E-5105142IPR001841Zinc finger, RING-type
CDDcd001621.12E-6105146No hitNo description
PROSITE patternPS005180120129IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006260Biological ProcessDNA replication
GO:0000808Cellular Componentorigin recognition complex
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
TISSEKAGGA HGPLRASAHI RVSARFDYQP DICKDYKETG YCGYGDACKF MHDRGDYKSG  60
WQLEKEWDEA EKARKRNLAL GGNDEDEEDV DQAEDEEDDE LPFACFICRE PFVDPVVTKC  120
KHYFCEHCAL KHHARNKKCF VCNKPTMGTF NVAHEIKKKM AAEGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M8e-5412160181317RING finger protein 113A
5z58_M8e-5412160181317RING finger protein 113A
6ff4_t8e-5412160181317RING finger protein 113A
6ff7_t8e-5412160181317RING finger protein 113A
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010052808.11e-121PREDICTED: zinc finger CCCH domain-containing protein 1 isoform X3
RefseqXP_010052809.11e-121PREDICTED: zinc finger CCCH domain-containing protein 1 isoform X3
RefseqXP_010052810.11e-121PREDICTED: zinc finger CCCH domain-containing protein 1 isoform X3
RefseqXP_018727625.11e-121PREDICTED: zinc finger CCCH domain-containing protein 1 isoform X3
SwissprotQ8GX841e-94C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A059CEL11e-120A0A059CEL1_EUCGR; Uncharacterized protein
STRINGXP_010052807.11e-119(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.15e-96C3H family protein