PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC007811.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 508aa    MW: 54907.6 Da    PI: 5.047
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC007811.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS307.53.1e-941034991374
          GRAS   1 lvelLlecAeavss..gdlelaqalLarlselaspd....gdpmqRlaayfteALaarlarsvselykalppsetsekn.......sseelaalklf 84 
                   lv+lL+++Aea+ss  ++ ela+ +L rl+el+sp+    g++++Rlaa+ft AL+  l + +       + s   +++       ++++l a++l+
  EcC007811.20 103 LVHLLMAAAEALSSegENRELARVILVRLKELVSPAsggcGTNVERLAAHFTDALQGLLEGAGAVAQGGGKHSIGGRSHrleggynQTDVLVAFQLL 199
                   68**********99767889************99973333469****************995443332222222222222345666*********** PP

          GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg..skeeleetgerLakfAeelgvpfe 177
                   +++sP++kf+h+taNqaIleav +e+rvH++D+di++G+QW++L+qaL s++  ++ p+lRiT+v+++ sg  s ++++etg+rLa +A+++g pf+
  EcC007811.20 200 QDMSPYVKFGHFTANQAILEAVGHERRVHVVDYDIMEGVQWASLMQALVSQDggRPGPHLRITAVSRACSGrrSITTVQETGRRLAAYAKSVGQPFS 296
                   ****************************************************544567*********99889999********************** PP

          GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsle 272
                   f+   ++  e++++ +L++ +gEal  n++l+l +   ++ ++   + ++L+  + lsP++v++ve+ea    +++ F+ rf+++l++ysa++dsle
  EcC007811.20 297 FHQYRMDPDETFRPAALKLVQGEALFFNCMLHLPHSTYHTPAS---IASFLSGARALSPTLVTLVEEEAGPagGGGGFMGRFMDSLHHYSAVYDSLE 390
                   ***9999************************986665443333...336*******************98766889********************* PP

          GRAS 273 aklpreseerikvErellgreivnvvacegaer....rerhe...tlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlg 361
                   a++p  + +r+ vE+++lg++i   +    + r    +e++e   + ++W e+l + GFkp ++s+++ +qakll+  ++ dgyrvee   + lvlg
  EcC007811.20 391 AGFPMPDWARALVEKVFLGPRIAGSLVRMYRGRpgeqEEEEEgsgKGGSWGEWLVAEGFKPGRVSSSNHCQAKLLVGLFD-DGYRVEEVaGNRLVLG 486
                   **********************998887665541111222221114568*******************************.******87366788** PP

          GRAS 362 WkdrpLvsvSaWr 374
                   Wk+r+L+s+S W+
  EcC007811.20 487 WKSRRLLSASIWT 499
                   ************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.62977479IPR005202Transcription factor GRAS
PfamPF035141.1E-91103499IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MDMAIDYVTM MEFSGQSTAT TDEFDGGCRD WSDWSPVLDW DAVPGSGLGG FDDLLASLLE  60
DGTGPDQPHL PPQWVDSPPS VHTVANDKEG DETDGHDFKG LRLVHLLMAA AEALSSEGEN  120
RELARVILVR LKELVSPASG GCGTNVERLA AHFTDALQGL LEGAGAVAQG GGKHSIGGRS  180
HRLEGGYNQT DVLVAFQLLQ DMSPYVKFGH FTANQAILEA VGHERRVHVV DYDIMEGVQW  240
ASLMQALVSQ DGGRPGPHLR ITAVSRACSG RRSITTVQET GRRLAAYAKS VGQPFSFHQY  300
RMDPDETFRP AALKLVQGEA LFFNCMLHLP HSTYHTPASI ASFLSGARAL SPTLVTLVEE  360
EAGPAGGGGG FMGRFMDSLH HYSAVYDSLE AGFPMPDWAR ALVEKVFLGP RIAGSLVRMY  420
RGRPGEQEEE EEGSGKGGSW GEWLVAEGFK PGRVSSSNHC QAKLLVGLFD DGYRVEEVAG  480
NRLVLGWKSR RLLSASIWTA SSDPDLLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-51885024382Protein SCARECROW
5b3h_A7e-51885023381Protein SCARECROW
5b3h_D7e-51885023381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010064996.10.0PREDICTED: nodulation-signaling pathway 2 protein
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A059BXB00.0A0A059BXB0_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010064996.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99142736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-134GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]