PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC007586.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 450aa    MW: 50080.1 Da    PI: 8.162
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC007586.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.51.4e-14267312454
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   +h e+Er+RRd++N++f  Lr+++P+       +++Ka+ L  Av+YIk+L
  EcC007586.10 267 SHVEAERQRRDKMNQRFYALRSVVPNV-----SRMDKASLLADAVDYIKEL 312
                   799***********************6.....4****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.1E-3725194IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474595.23E-18261324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.949263312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-17267322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-12267312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.25E-14268313No hitNo description
SMARTSM003533.7E-16269318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MEELASCASS SLVVPKYHKA PPTLQQLVHL ILQTRTEGWV YSIFWQPSRD KHGGLVLTWG  60
DGHFRGTTKD PLASKPSPKR VLEEAQFMDG KLTHGSDNGD PEWYYIFSVT RSYSSEDGIL  120
GRAFRSGGHV WLSGEDRPEL EMYEHDERVK EARMYGIKSI VCISVPNGSG VLELGSAEII  180
REDWSLVHLA KNLFPSHFSS LRVDPRGENQ HNDAREEPAL FGVSKRPLSK PAGLACHNIS  240
TKKGMKTIID DDDKESSLSP SPSGPLSHVE AERQRRDKMN QRFYALRSVV PNVSRMDKAS  300
LLADAVDYIK ELRSRIDALE SKLVKSEPPS PKRHKSKRAV ADRTETTSLS SKNSSTVVAR  360
TLAIPGPREM TVEVTVVGRE AVVRVWSPNL EHPCARLMDV LKELGLVVQH ASMSCVKGMM  420
LQDVVIRTPV ECLVSDESIR DAIRGKLGEV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-22151942192Transcription factor MYC3
4rqw_B3e-22151942192Transcription factor MYC3
4rs9_A3e-22151942192Transcription factor MYC3
4yz6_A3e-22151942192Transcription factor MYC3
5gnj_A3e-22265321662Transcription factor MYC2
5gnj_B3e-22265321662Transcription factor MYC2
5gnj_E3e-22265321662Transcription factor MYC2
5gnj_F3e-22265321662Transcription factor MYC2
5gnj_G3e-22265321662Transcription factor MYC2
5gnj_I3e-22265321662Transcription factor MYC2
5gnj_M3e-22265321662Transcription factor MYC2
5gnj_N3e-22265321662Transcription factor MYC2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058370.10.0PREDICTED: transcription factor MYC2
TrEMBLA0A059C2W20.0A0A059C2W2_EUCGR; Uncharacterized protein
STRINGXP_010058370.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30392163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.13e-41bHLH family protein