PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC007213.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 302aa    MW: 33100.1 Da    PI: 7.3233
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC007213.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.41.2e-0890110526
                   --SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                    C++f++ G Ck Gd+C FaHg
  EcC007213.10  90 ACPDFRK-GACKKGDSCEFAHG 110
                   7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.83E-584114IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-585111IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.92985112IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-689112IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-690110IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
AAGGGECCND LTACGGFLPS THHQDEEDEE DGRAPGEDGV LGCDEFRMYE FKVRKCARGR  60
SHDWTECPYA HPGEKARRRD PRRFFYSGTA CPDFRKGACK KGDSCEFAHG VFECWLHPER  120
YRTQACKDGQ SCRRRPWSAS FISSPTSILT TSSPPISPPT NSPPMSPNQR GGCCGSPGSV  180
SELVACIRNM QIAKMKMSPR GQMGGSLFGS PLRPGYHLAA PVTPRAESSP RYGQLGGGGG  240
LFDLWESHRR CEEEPSMERV ESWRDLRAKM YAKLSKENSL DGTDLGGSGS GPDVGWVFEL  300
VM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049147.11e-166PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 2
SwissprotQ9M0G28e-77C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A059CV961e-113A0A059CV96_EUCGR; Uncharacterized protein
STRINGXP_010049147.11e-165(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.15e-65C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]