PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC007086.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 556aa    MW: 61720 Da    PI: 8.5321
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC007086.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.36.2e-0698118323
                   ETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                   C  Cg++F++++ L  H+++H
  EcC007086.10  98 CRECGQRFNSWEALFGHMKRH 118
                   9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.17931IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.27E-8931No hitNo description
PROSITE profilePS501579.681936IPR007087Zinc finger, C2H2
PfamPF139124.9E-7932IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576672.27E-891118No hitNo description
SMARTSM003550.04496118IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.15996123IPR007087Zinc finger, C2H2
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
PfamPF139121.5E-498120IPR007087Zinc finger, C2H2
SMARTSM003550.037372394IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.31E-7372394No hitNo description
PROSITE profilePS5015710.533372399IPR007087Zinc finger, C2H2
PfamPF139126.1E-11372395IPR007087Zinc finger, C2H2
PROSITE patternPS000280374394IPR007087Zinc finger, C2H2
SuperFamilySSF576671.31E-7458485No hitNo description
SMARTSM003550.26463485IPR015880Zinc finger, C2H2-like
PfamPF139122.0E-9463485IPR007087Zinc finger, C2H2
PROSITE profilePS501579.224463485IPR007087Zinc finger, C2H2
PROSITE patternPS000280465485IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MEGDPEFKHV CKLCSKSFPC GRSLGGHMRS HPTNSSPAEM DEKQLSLNTK KLSSSISSTG  60
ALTPTNSNNG GYGLRENPKK TWRLSELSED TSLHEKLCRE CGQRFNSWEA LFGHMKRHSE  120
KERVPADNSL EDRDSRTSDD RKLAMDSESD GEVIITNRRR RSERRKRYIV TTATASSSLS  180
FANAPSCVSE IEQEQEEVAM CLMMLSRDVV GHNRGALDFV AESSDNRSRS DVKNLSSDPK  240
KVLKLEKVKE NNCESGSLGR GELPLLDQSK TELSSSGKSS RNRSGMDNSN EIHKFKAKNK  300
SKREVPELSV AKDSAEAAGF DRIQKKSFKC DKSKRKFSDC DDPELRVKSL KKLTDGFPES  360
GKVLDCREKS KFECTICNKI FHSYQALGGH KASHNKTKEN SAARKESSAN RVAAEVSPAP  420
IGNSDDKLVK SCKIEKGNAD GMTHLSGQKV EDFNGLNKCK KQHECPVCFK IFSSGQALGG  480
HKRSHLLPTN ARSLVITKPI PEIRDFLDLN LPAPAEDHKN HQQDEEEEEG SSHVSFSSWW  540
VGSNPNNHVA LTGLNC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010037208.10.0PREDICTED: uncharacterized protein LOC104425995
TrEMBLA0A059A5C50.0A0A059A5C5_EUCGR; Uncharacterized protein
STRINGXP_010037208.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16472912
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.14e-26C2H2-like zinc finger protein