PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC006382.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family AP2
Protein Properties Length: 275aa    MW: 31076.6 Da    PI: 10.5898
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC006382.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.22e-1362109255
           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   +y+GVr +k  g++ A I++      + k+++lg++ t+ +Aa+a+++ +++l+g
  EcC006382.20  62 HYRGVRPRK-PGKFGAKIQV------NgKHVWLGTYKTKIDAARAYDQKALELRG 109
                   7*****777.9*********......44*************************98 PP
2AP240.66.3e-13135185255
           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   +y+GV  ++   +++A+Ir+ps+ng  k++ lg++ t+ +Aa+a+++ +++l+g
  EcC006382.20 135 HYRGVQERP-GRKFRARIRVPSQNG--KQVCLGTYKTKIDAARAYDQKALELHG 185
                   79***7555.778********9998..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.7E-2161117IPR001471AP2/ERF domain
SMARTSM003801.0E-2362123IPR001471AP2/ERF domain
PfamPF008473.1E-862109IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-1762118IPR016177DNA-binding domain
PROSITE profilePS5103217.83362117IPR001471AP2/ERF domain
CDDcd000183.67E-1862119No hitNo description
PRINTSPR003674.8E-96374IPR001471AP2/ERF domain
PRINTSPR003674.8E-999119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-21134193IPR001471AP2/ERF domain
SMARTSM003801.8E-19135199IPR001471AP2/ERF domain
CDDcd000185.34E-17135195No hitNo description
PfamPF008471.1E-5135185IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-17135194IPR016177DNA-binding domain
PROSITE profilePS5103217.108135193IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006511Biological Processubiquitin-dependent protein catabolic process
GO:0005622Cellular Componentintracellular
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004843Molecular Functionthiol-dependent ubiquitin-specific protease activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MQHKATTPHM LGLDIGLLFL MASKTLQSPK VAVLRKVVLP QSAEPNQTVQ KGSNQARDEW  60
RHYRGVRPRK PGKFGAKIQV NGKHVWLGTY KTKIDAARAY DQKALELRGS KAILNFPPDD  120
KKEEGSNQAR DEQRHYRGVQ ERPGRKFRAR IRVPSQNGKQ VCLGTYKTKI DAARAYDQKA  180
LELHGSKAIL NFPPDGKKRH QETTAARADG KKRCQETTPR GGGGGDNKVI VKKEEVEGYN  240
KVIVKKVVIV KKEEVEGYNK VIVKKEVVEE DWHEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-1761193463ATERF1
3gcc_A5e-1761193463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and in leaves. Also strongly induced by cycloheximide, mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010041307.12e-66PREDICTED: ethylene-responsive transcription factor ERF095-like
SwissprotQ404781e-18ERF5_TOBAC; Ethylene-responsive transcription factor 5
STRINGXP_010041307.17e-66(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17490.11e-20ethylene responsive element binding factor 6