PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC006043.50
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 595aa    MW: 67077.6 Da    PI: 5.2288
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC006043.50genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS284.13.9e-872235912372
          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykal.ppsetsekn.sseelaalklfsevsPilkfsh 95 
                   v lLl +Ae v ++++++a++lL++   l+s++g+ +qRl++yf+eAL++r+ r s+   +k++ + ++ +++  + + +++  ++++  P+l++++
  EcC006043.50 223 VLLLLFAAEKVYHKEFHRASKLLNQCDYLCSNKGNQIQRLVFYFAEALHERIDRgSGRIPVKTCgRGQKPDPQAqTMNPTQSKIAYHQELPFLQVAQ 319
                   568999************************************************6655556666444444333325555555556************ PP

          GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                   ++  qaIle v+ +++vH+iD+di+ GlQW  L+qaLas   ++   l+iT+vg    +sk+ + etg+rL +fA+++ +pf f+ +v+ ++ dl+ 
  EcC006043.50 320 FAGVQAILENVADAKKVHVIDLDINFGLQWTILMQALASCYdRQIELLKITAVGT---SSKHLIDETGKRLVNFAQSMSLPFTFKSVVVGDVLDLKE 413
                   **************************************76647788*********...579999********************************* PP

          GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288
                   e L ++++Ea++V + + l +l  ++  les    ++k++++++P+v+vv+e ea+hns++F +rf+e+l + +a+fd+lea+++re+++r+ +E  
  EcC006043.50 414 ELLVIDTEEAVVVYSEYFLWTLIPQPNRLES----LMKVIRKTNPRVMVVAEVEANHNSPNFGNRFIESLFFNAACFDCLEASMSREDSNRMAIESI 506
                   ***********************88887777....************************************************************** PP

          GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSa 372
                   +lg++++n++a+eg+er  r+ +   Wr+ + ++ + +++ls++   qa+l+++k++ ++  +++ + ++l++gWk+ p++s+S 
  EcC006043.50 507 FLGQAVKNILATEGEERMVRTVKIDVWRAFFARFRMIEAELSSSSLYQANLVMKKFGcGRFCTLDMNGKCLLIGWKGTPVLSLSI 591
                   *********************************************************999899*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.812196572IPR005202Transcription factor GRAS
PfamPF035141.4E-84223591IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006396Biological ProcessRNA processing
GO:0055114Biological Processoxidation-reduction process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0016620Molecular Functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MTSTMFSFGA LDPVGILENL GSNNELDDVV GGRSGSKQSQ YREEDWRDSS FTETLSSDFG  60
LYRDNLSESD FGFSKYQLQN QEENPLPAHD LLDDLNFEVD CPPLQTCLKE IANLGSKPIG  120
IQDSQDEKEK GHPFLLASLE LLKNYGHRLK KLDRDKIVEL SSNTSLSRLS EQNLSTEEII  180
RLAGVNFIQT TSSVGDPLAA FSHPYRLSFS DLSDQEMKDA QLVLLLLFAA EKVYHKEFHR  240
ASKLLNQCDY LCSNKGNQIQ RLVFYFAEAL HERIDRGSGR IPVKTCGRGQ KPDPQAQTMN  300
PTQSKIAYHQ ELPFLQVAQF AGVQAILENV ADAKKVHVID LDINFGLQWT ILMQALASCY  360
DRQIELLKIT AVGTSSKHLI DETGKRLVNF AQSMSLPFTF KSVVVGDVLD LKEELLVIDT  420
EEAVVVYSEY FLWTLIPQPN RLESLMKVIR KTNPRVMVVA EVEANHNSPN FGNRFIESLF  480
FNAACFDCLE ASMSREDSNR MAIESIFLGQ AVKNILATEG EERMVRTVKI DVWRAFFARF  540
RMIEAELSSS SLYQANLVMK KFGCGRFCTL DMNGKCLLIG WKGTPVLSLS ILKFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-3523059027376Protein SCARECROW
5b3h_A6e-3523059026375Protein SCARECROW
5b3h_D6e-3523059026375Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010027100.10.0PREDICTED: DELLA protein RGL1
TrEMBLA0A059B6J20.0A0A059B6J2_EUCGR; Uncharacterized protein
STRINGXP_010027100.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-54RGA-like 1