PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC005927.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family Trihelix
Protein Properties Length: 340aa    MW: 37331.3 Da    PI: 10.3078
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC005927.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.72e-1551134186
      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                   +W++  v  L+ea++ ++   +r+klk+++We+v++++     +++  ++++qCk+k+e+++kry+ + ++         s++p++ +l+
  EcC005927.20  51 EWSEGAVSSLLEAYETKWVLRNRAKLKGHDWEDVARHVssraNSTKSPKTQTQCKNKIESMKKRYRTESATPDT------SSWPLYPRLD 134
                   5*************************************88777778889999**************99988875......5799999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.6E-2049135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045454Biological Processcell redox homeostasis
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MDKEGNQEPP SLLPNNSTVK LEESPRKSAT ASGALGGGGG GGGSDRLKRD EWSEGAVSSL  60
LEAYETKWVL RNRAKLKGHD WEDVARHVSS RANSTKSPKT QTQCKNKIES MKKRYRTESA  120
TPDTSSWPLY PRLDMLLRGT APPQLPLAPP PFSQPLASNP PPLILLEPSS AAAVPQLLPL  180
SGPPPPPPPG NAQNSHGSNG VDKLPKEDGA GTKLSDQVSD KNPVETDSST PALYSDKQKS  240
SRSKKHKTVM KMEKNKKRRK REEYGIAESI RWLAEVIVRS EQSRMETMKE LEKMRIEAEA  300
RRGEMDLKRT EIIANTQLEI AKLFAGSNKG IDSSLRIGRN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13143SGALGGGGGGGGS
2255259KKRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067722.10.0PREDICTED: trihelix transcription factor ASIL2
TrEMBLA0A059BI690.0A0A059BI69_EUCGR; Uncharacterized protein
STRINGXP_010067722.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM98592533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.11e-104sequence-specific DNA binding transcription factors