PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC005467.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 369aa    MW: 40118.8 Da    PI: 7.6575
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC005467.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.12.4e-30195251259
                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   +DgynWrKYGqK+vkg  fprsYY+C++ +C+vkkkve+s  d++++eitY+g+H+he
  EcC005467.20 195 EDGYNWRKYGQKQVKGCGFPRSYYKCSHLNCSVKKKVEHSL-DGRITEITYRGQHQHE 251
                   8****************************************.***************8 PP
2WRKY53.64.6e-172983362159
                   -EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY  21 prsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     sYY+Ct+agC+v+k++er+a dpk v++tYeg+Hnh+
  EcC005467.20 298 EESYYKCTYAGCNVRKHIERAALDPKSVITTYEGKHNHT 336
                   569***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.4E-27189253IPR003657WRKY domain
PROSITE profilePS5081125.385189338IPR003657WRKY domain
SuperFamilySSF1182901.57E-24192253IPR003657WRKY domain
SMARTSM007743.7E-32194252IPR003657WRKY domain
PfamPF031066.2E-23195251IPR003657WRKY domain
SMARTSM007741.1E-8259337IPR003657WRKY domain
PfamPF031067.7E-12296335IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-15297338IPR003657WRKY domain
SuperFamilySSF1182901.24E-12297338IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005886Cellular Componentplasma membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MALLYNASPG PLTLVSSFFA ESDGGSFSEL LAGAMYSPLA VNAAGPSSFL WDYPRENPWR  60
EGEPRDGQAG LPVGAVKSPL FTVPPGLSPS GLLLSPGFFS PKSPFGMSHQ QALAQVTAQA  120
QVALARSHEH SQLEINPPSE ASKEPLPDEP SLMPNEDSHQ LSPSDATTSM AESSDFVSSS  180
HKWEALPMVL EKPTEDGYNW RKYGQKQVKG CGFPRSYYKC SHLNCSVKKK VEHSLDGRIT  240
EITYRGQHQH EMPQAKKTSK DGNNLNRSTN SLAKSQAVLQ GQSGRPSAPA MLRSGQDEES  300
YYKCTYAGCN VRKHIERAAL DPKSVITTYE GKHNHTAPSA GKRGRTVEAT EFGDAQRSVL  360
RLKEEQVAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-151962531674WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010029360.10.0PREDICTED: probable WRKY transcription factor 4 isoform X1
RefseqXP_018718493.10.0PREDICTED: probable WRKY transcription factor 4 isoform X2
SwissprotQ9XI904e-57WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A059AQJ40.0A0A059AQJ4_EUCGR; Uncharacterized protein
STRINGXP_010029360.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01080.13e-42WRKY DNA-binding protein 58
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]