PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC004818.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 289aa    MW: 33025.3 Da    PI: 4.6881
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC004818.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH215.8e-07239258625
                   -SGGGGTS--TTTTT-SS-S CS
       zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                   C+f+++tG C++G rC++ H
  EcC004818.20 239 CPFHLKTGACRFGQRCSRVH 258
                   ******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.23233261IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-5238258IPR000571Zinc finger, CCCH-type
PRINTSPR018485.0E-13239258IPR009145U2 auxiliary factor small subunit
PRINTSPR018485.0E-13258278IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MAEPISDDGG GGGDTAAAAA CGEQTPPAME GAGPTSRKEK RKAAKKMKRK QLRKEAAARE  60
REEEEARLND PEERRRAEMA EKEEEERRER ERKEFEERER AWVEAMERKR KKEEEEEAAE  120
AEERARALEE SRRQQDEDED HNRDDGDDWE YVEEEGPAEI IWQGNEIIVK KKTIRVPKKG  180
SDTQMSKEDA DRPTSNPLPP QCEAYSDYKN ASTLSAQQVL ENVALQVPNF GTEQDKAHCP  240
FHLKTGACRF GQRCSRVHFY PDKSCTLLIK NMYNGPGLAW EQDEGLEVG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18693RRERERKE
2107111RKRKK
3107112RKRKKE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018733190.11e-123PREDICTED: zinc finger CCCH domain-containing protein 5
SwissprotQ9SY743e-94C3H5_ARATH; Zinc finger CCCH domain-containing protein 5
TrEMBLA0A059B8Y91e-115A0A059B8Y9_EUCGR; Uncharacterized protein
STRINGXP_010065243.11e-120(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.17e-65C3H family protein
Publications ? help Back to Top
  1. Lorković ZJ,Wieczorek Kirk DA,Lambermon MH,Filipowicz W
    Pre-mRNA splicing in higher plants.
    Trends Plant Sci., 2000. 5(4): p. 160-7
    [PMID:10740297]
  2. Domon C,Lorković ZJ,Valcárcel J,Filipowicz W
    Multiple forms of the U2 small nuclear ribonucleoprotein auxiliary factor U2AF subunits expressed in higher plants.
    J. Biol. Chem., 1998. 273(51): p. 34603-10
    [PMID:9852132]