PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC004245.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

GRAS

Protein Properties

Length: 565aa MW: 63681.8 Da PI: 5.6943

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC004245.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	269.5	1.1e-82	196	563	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl...fsevsPilkfs 94 +lLl++Ae v +++ +a++lL+ + las++ +p qR++ +f+eAL+ r+ + ++ +++ ++ +e +++ +s+ l++ + P+++++ EcC004245.20 196 AQLLLAAAEKVGGQQFDCASRLLSYCELLASKRVSPAQRIVLHFVEALRDRMGKeTGRSIS--MKGTEGKTEPVSQGLSFNLTtleCRRQLPFIQVA 290 699************************************************93333333..3333333333555555544444677889** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190 +ta q I e + ++ r+H iD++i G+QW+ ++qaLa+R+++p l+iT+vgs + +e+ee g+rLa++Ae++++pf+f+v+ +led++ EcC004245.20 291 EFTALQVIIEHTVSAARIHLIDLQIRSGIQWIVFMQALAERKGEPIeLLKITAVGS----ECREMEEAGKRLASVAESMKIPFSFQVVFLPNLEDIR 383 **************************************6655499***....99*********************9999** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287 e ++++ Ea+aV l l+++ ++++sle+ ++ ++++l P v+v++e ea+hns+sF++rf+eal +ys+ fd+le+ + +e+e ++ +E+ EcC004245.20 384 EELFNIEDSEAVAVYAPLVLQTMIARPTSLEK----LVGVIRNLDPSVMVMTEVEANHNSPSFVARFVEALFFYSTYFDCLETCMTQETEYKTILEE 476 ****************************....*********************************************999999999998 PP GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +++ i+n+v++eg er+ r + Wr+ + + + ++++s+ a+l+ +++ ++ +++ + ++l+ gWk+ p++s+SaW+ EcC004245.20 477 L-FSNGIRNIVSAEGHERVTRSVKIDVWRAFFARYRMVEIEFSDASIYHAHLVAKHFTcERFCTLDRDGNCLLVGWKGTPMFSLSAWK 563 7.****************************************************88878999*******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	39.498	169	542	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.8E-80	196	563	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 565 aa Download sequence Send to blast
MANISFSFPS FGFGEGYLLD GLDKERRATK GVQEHRGEDV AEPHPFFSGF GSQQGNLSSK 60 GVHLPDPSQQ LVANSMVLDR FNLKVSSPSA LGSEESLELG NTRKPMVLPS SKASLELLSN 120 YWTVLKKSKR DQPREPNSEV PVSQPKLSTE EIMRVAGTRY IQFQDQRDNY FYLLTHPYGP 180 TFSGLSEEDL KEVELAQLLL AAAEKVGGQQ FDCASRLLSY CELLASKRVS PAQRIVLHFV 240 EALRDRMGKE TGRSISMKGT EGKTEPVSQG LSFNLTTLEC RRQLPFIQVA EFTALQVIIE 300 HTVSAARIHL IDLQIRSGIQ WIVFMQALAE RKGEPIELLK ITAVGSECRE MEEAGKRLAS 360 VAESMKIPFS FQVVFLPNLE DIREELFNIE DSEAVAVYAP LVLQTMIARP TSLEKLVGVI 420 RNLDPSVMVM TEVEANHNSP SFVARFVEAL FFYSTYFDCL ETCMTQETEY KTILEELFSN 480 GIRNIVSAEG HERVTRSVKI DVWRAFFARY RMVEIEFSDA SIYHAHLVAK HFTCERFCTL 540 DRDGNCLLVG WKGTPMFSLS AWKFQ

Sequence ? help Back to Top

Protein Sequence Length: 565 aa Download sequence Send to blast

MANISFSFPS FGFGEGYLLD GLDKERRATK GVQEHRGEDV AEPHPFFSGF GSQQGNLSSK  60
GVHLPDPSQQ LVANSMVLDR FNLKVSSPSA LGSEESLELG NTRKPMVLPS SKASLELLSN  120
YWTVLKKSKR DQPREPNSEV PVSQPKLSTE EIMRVAGTRY IQFQDQRDNY FYLLTHPYGP  180
TFSGLSEEDL KEVELAQLLL AAAEKVGGQQ FDCASRLLSY CELLASKRVS PAQRIVLHFV  240
EALRDRMGKE TGRSISMKGT EGKTEPVSQG LSFNLTTLEC RRQLPFIQVA EFTALQVIIE  300
HTVSAARIHL IDLQIRSGIQ WIVFMQALAE RKGEPIELLK ITAVGSECRE MEEAGKRLAS  360
VAESMKIPFS FQVVFLPNLE DIREELFNIE DSEAVAVYAP LVLQTMIARP TSLEKLVGVI  420
RNLDPSVMVM TEVEANHNSP SFVARFVEAL FFYSTYFDCL ETCMTQETEY KTILEELFSN  480
GIRNIVSAEG HERVTRSVKI DVWRAFFARY RMVEIEFSDA SIYHAHLVAK HFTCERFCTL  540
DRDGNCLLVG WKGTPMFSLS AWKFQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-33	203	562	27	378	Protein SCARECROW
5b3h_A	1e-33	203	562	26	377	Protein SCARECROW
5b3h_D	1e-33	203	562	26	377	Protein SCARECROW
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010026092.2	0.0	PREDICTED: protein SCARECROW 1
TrEMBL	A0A059AWT1	0.0	A0A059AWT1_EUCGR; Uncharacterized protein
STRING	XP_010026092.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16533	9	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	2e-51	RGA-like 1