PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC004245.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 348aa    MW: 39618 Da    PI: 7.2783
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC004245.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS257.16.5e-79334330374
          GRAS  30 laspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalkl....fsevsPilkfshltaNqaIleavegeervHiiDfdisq 121
                   las++++p qR++ +f+eAL+ r+ r   e+ ++++++ t+ k  s+++  +++l     +   P+ +++++ta q I e + +++r+H iD++i  
  EcC004245.10   3 LASKRASPAQRMVLHFVEALRDRIDR---ETGRSISMKGTEGKAgSISRCLSTNLttlkMHAHLPFNQVTQFTALQVIIEHTVSATRIHLIDLQIRS 96 
                   699999********************...55666666666555556666666655677889999********************************* PP

          GRAS 122 GlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldes 217
                   G+QW+ L++aLa+R+++p   l+iT+vgs   ++++++ee g+rL ++Ae++++pf+f+v+   +le+++ e + ++ gEa+aV   l l ++ +++
  EcC004245.10  97 GIQWIVLIHALAERKGDPVeLLKITAVGS---VDRDKIEEAGKRLGSIAESMKIPFSFQVVFLPNLEEIREELFILEDGEAIAVYAPLVLRTMIARP 190
                   ***************7776599*******...79**************************9999*****999999999******************* PP

          GRAS 218 vsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlek 314
                   +sle+    ++++v++l+P v+v++e ea+hns+sF+ rf+eal +ysa fd+le+ + +e+e ++ vE+  ++  i+n+v++eg er++r  +   
  EcC004245.10 191 TSLEK----LISVVRNLNPSVMVMTEVEANHNSPSFVGRFIEALFFYSAYFDCLETCMTPETEYQTIVEEL-FSSGIRNIVSMEGHERVMRSVKIDV 282
                   *****....*************************************************9999999999998.************************* PP

          GRAS 315 WrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   Wr+ + +  + ++++s+   + a+l+ +++  ++  +++ + ++l+ gWk+ p++s+SaW+
  EcC004245.10 283 WRAFFVRYRMVEIEFSDASLCHAHLVAKQFTcERFCTLDRDGNCLLVGWKGTPMFSLSAWK 343
                   *******************************88878999*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.3311322IPR005202Transcription factor GRAS
PfamPF035142.3E-763343IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
ELLASKRASP AQRMVLHFVE ALRDRIDRET GRSISMKGTE GKAGSISRCL STNLTTLKMH  60
AHLPFNQVTQ FTALQVIIEH TVSATRIHLI DLQIRSGIQW IVLIHALAER KGDPVELLKI  120
TAVGSVDRDK IEEAGKRLGS IAESMKIPFS FQVVFLPNLE EIREELFILE DGEAIAVYAP  180
LVLRTMIARP TSLEKLISVV RNLNPSVMVM TEVEANHNSP SFVGRFIEAL FFYSAYFDCL  240
ETCMTPETEY QTIVEELFSS GIRNIVSMEG HERVMRSVKI DVWRAFFVRY RMVEIEFSDA  300
SLCHAHLVAK QFTCERFCTL DRDGNCLLVG WKGTPMFSLS AWKFRRER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-32334548381Protein SCARECROW
5b3h_A2e-32334547380Protein SCARECROW
5b3h_D2e-32334547380Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010026092.20.0PREDICTED: protein SCARECROW 1
TrEMBLA0A059AWG80.0A0A059AWG8_EUCGR; Uncharacterized protein
STRINGXP_010026091.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.17e-50RGA-like 1