PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC003993.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 424aa    MW: 48273.4 Da    PI: 6.5755
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC003993.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.62.4e-53211481128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 
                   lppGfrFhPtdeel+++yL+ kv +  ++  + i+evd++++ePwdLp+ +k +e+ewyfFs rd+ky+tg r+nrat +gyWkatgkd+ev+s+ +
  EcC003993.10  21 LPPGFRFHPTDEELITFYLASKVFNGAFSGLD-IAEVDLNRCEPWDLPEVAKMGEREWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVHSAaT 116
                   79*************************99955.***************8888999**************************************9978 PP

           NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                   g+l g+kktLvfy+grap+gekt+Wvmheyrl
  EcC003993.10 117 GALLGMKKTLVFYRGRAPRGEKTKWVMHEYRL 148
                   899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-6317170IPR003441NAC domain
PROSITE profilePS5100559.80121170IPR003441NAC domain
PfamPF023656.9E-2822148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MLGVEDLLCE LRREEGNEQG LPPGFRFHPT DEELITFYLA SKVFNGAFSG LDIAEVDLNR  60
CEPWDLPEVA KMGEREWYFF SLRDRKYPTG LRTNRATGAG YWKATGKDRE VHSAATGALL  120
GMKKTLVFYR GRAPRGEKTK WVMHEYRLDG HFSCRHTCKD EWVICRIFHK TMEKKSLLFQ  180
GQNYMLEVCS PPSTGSLPQL LETPITSTPP PNHLLEHQSQ ANSYQNQTQP FLMHQRDIDF  240
KTLMSNPFVP LVPDLQAPSF SPTVTTTTHK DSYNNTDTKN IIVTPSLVSP SSMLFKSLLS  300
HQDLFTATNL KEHQHHTVLN QCKTETNFSH FQLNVDDDND ADGLHSVVDK IHIVPFHQNH  360
QSPVLFEMDT HPTTTSSVPD NNNAPHGHTV HHEMSTSTMA FNRVGPSFQM LVDPAFRESW  420
PLDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-52111733171Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010064957.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A059BWH40.0A0A059BWH4_EUCGR; Uncharacterized protein
STRINGXP_010064957.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40028174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.11e-102NAC family protein