PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC003592.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 425aa    MW: 47917.7 Da    PI: 8.4881
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC003592.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-05103124223
                   EETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                   +C+ Cg +F+ +  L++H++ H
  EcC003592.20 103 TCEECGATFKKPACLRQHMQGH 124
                   6******************988 PP
2zf-C2H214.97.7e-05130154123
                   EEET..TTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                   +kC+  dC+ s++rk++L rH   H
  EcC003592.20 130 FKCSieDCSASYRRKYHLARHFLQH 154
                   89*******************7766 PP
3zf-C2H220.41.4e-06159184123
                   EEET..TTTEEESSHHHHHHHHHH.T CS
       zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                   ++Cp   C+ksF  + n+krH++  H
  EcC003592.20 159 FSCPvdGCDKSFAYQGNMKRHLNEiH 184
                   89********************9988 PP
4zf-C2H218.74.8e-06201225123
                   EEET..TTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                   ++Cp   Cgk+F+  s L++H  +H
  EcC003592.20 201 HVCPevGCGKVFKFASKLRKHEDSH 225
                   79*******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.022102124IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.988102129IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.1E-7103128IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.08E-9103154No hitNo description
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.5E-8129156IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.515130157IPR007087Zinc finger, C2H2
SMARTSM003550.019130154IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280132154IPR007087Zinc finger, C2H2
SuperFamilySSF576671.8E-8140195No hitNo description
Gene3DG3DSA:3.30.160.603.9E-8157185IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.8E-4159184IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.965159189IPR007087Zinc finger, C2H2
PROSITE patternPS000280161184IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.3E-6199226IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0076201225IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.868201225IPR007087Zinc finger, C2H2
PROSITE patternPS000280203225IPR007087Zinc finger, C2H2
SMARTSM0035510266289IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280268289IPR007087Zinc finger, C2H2
SMARTSM0035531292313IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.4E-4305347IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.02E-7307366No hitNo description
SMARTSM0035529324349IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
HSQVRPRTTP IQASGGFTTA STAGSAGPGS PSSLLTSSRA TSSIGNCWFC VCGICSRLNV  60
RHDGNMGTDV KWFSSCFGLY PEEVEAAMAQ GVEGKEGAKA NNTCEECGAT FKKPACLRQH  120
MQGHSLETPF KCSIEDCSAS YRRKYHLARH FLQHKGKIFS CPVDGCDKSF AYQGNMKRHL  180
NEIHNDEEPS MSGKCKSLKQ HVCPEVGCGK VFKFASKLRK HEDSHGESLN YEGVLVKPND  240
IYELFNMLFD NNVISTAAVK LETVEAFCCE CMKYLSNVDY MKEHMRSAHQ LVNCDICGTK  300
QLRKNIQRHL LTHEKKNSAD SKAFRCDIEG YLSIFSTKSN LRQHVKVVHL EVRSFVCGHK  360
DCGKKFEYKC DILKFRPRFD KGDFEELDEQ FRSRPKGGRK RKCLTIESLV QKRVTLPNEL  420
DFLLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A8e-1810623219136PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D8e-1810623219136PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1393401RPKGGRKRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034379.10.0PREDICTED: transcription factor IIIA
TrEMBLA0A059DCN00.0A0A059DCN0_EUCGR; Uncharacterized protein
STRINGXP_010034379.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47142852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.28e-88transcription factor IIIA