PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC003469.40

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bHLH

Protein Properties

Length: 274aa MW: 30940.9 Da PI: 6.6428

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC003469.40	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.7	0.00049	103	136	20	55
HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 20 feeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + Lr+ lP + ++K s ++ ++v+YI+++q EcC003469.40 103 YGSLRKQLPIEF--LKGKRSISDHIHETVNYIRHMQ 136 568999*965..99*****************9 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003723	Molecular Function	RNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MSYFTSTIPF DETDEFFQCS SFDSHQQHHQ VDNYDDILYQ LSSPPDGNFF IGETLDDHGR 60 QGNKTSSVFD KPTAGAKPNG NTSKNKKVVH RDIEXXXXXX XXYGSLRKQL PIEFLKGKRS 120 ISDHIHETVN YIRHMQNKIQ ALSDRRDELK GLSDSGAPKE TPECSRTACS QGDTVMVQSC 180 MAGVEILINT ASQQGLPLSR AFKALSEEGV NVFSCNSTQV SERILHSIKA EVPLSLNIPQ 240 RMHIMPILLG FHLKFHFNPL IDEAPILYWG YLCR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010053369.1	1e-163	PREDICTED: transcription factor bHLH120
STRING	XP_010053369.1	1e-163	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25410.1	1e-28	bHLH family protein