PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC003458.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 325aa    MW: 37502.9 Da    PI: 9.9247
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC003458.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.21.7e-1915105299
                   EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
            B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                   fk+   sd+l++grl +pkkf++++g++   s  + l   sg +Wev+l   ++ ++ +l++GW +Fvk   ++ g f+vF+++g s f  +v +f+
  EcC003458.10  15 FKIV-LSDALQNGRLGIPKKFVRKYGSS--LSDLVFLHLASGDVWEVEL--LRGNDGAFLRRGWPDFVKHYAIEHGHFLVFRYEGGSAF--RVVIFD 104
                   4443.59******************977..776788888**********..88888889*************************99999..999998 PP

                   S CS
            B3  99 k 99 
                   k
  EcC003458.10 105 K 105
                   7 PP
2B357.72.1e-18218318199
                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                   ff + ++++  +++ l+ p +f+ ++  + ++s ++ l+ ++ r W+v++++   ++++++ +  GWk+Fv++n+Lk gD++vF+ +++ ++ +++v
  EcC003458.10 218 FFLAIMQPSFIRHC-LSAPARFFMKYIPNFRSSGDINLYVSDERFWSVRYKFgiYGRRRQIKFNCGWKRFVQDNNLKLGDVCVFEIMWKvRQISFRV 313
                   67777888889888.***********555567789***************9988888888***************************9999999999 PP

                   EEE-S CS
            B3  95 kvfrk 99 
                    +fr+
  EcC003458.10 314 LIFRA 318
                   99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.69E-257106IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-257106IPR015300DNA-binding pseudobarrel domain
CDDcd100171.04E-1812104No hitNo description
PROSITE profilePS5086314.45213106IPR003340B3 DNA binding domain
SMARTSM010193.0E-2014106IPR003340B3 DNA binding domain
PfamPF023621.7E-1615105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.7E-23211319IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-22212319IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.703217319IPR003340B3 DNA binding domain
CDDcd100171.29E-17217317No hitNo description
PfamPF023625.0E-16218318IPR003340B3 DNA binding domain
SMARTSM010192.3E-15218319IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MVGRGYFESQ TPHFFKIVLS DALQNGRLGI PKKFVRKYGS SLSDLVFLHL ASGDVWEVEL  60
LRGNDGAFLR RGWPDFVKHY AIEHGHFLVF RYEGGSAFRV VIFDKSATEI KYPLISENDD  120
PRMEEDVGDA SVEVFEDHSD QSRRNQRQEL PSSTLLSPSS KKKKKKKTNE RLNKQAVEVC  180
VFIRLNSGGG NNSACDANAG LKCEALERAT SFQSPNPFFL AIMQPSFIRH CLSAPARFFM  240
KYIPNFRSSG DINLYVSDER FWSVRYKFGI YGRRRQIKFN CGWKRFVQDN NLKLGDVCVF  300
EIMWKVRQIS FRVLIFRANR DAVEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1220531935143B3 domain-containing transcription factor VRN1
4i1k_B1e-1220531935143B3 domain-containing transcription factor VRN1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160166KKKKKKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010026406.10.0PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1
TrEMBLA0A059B0611e-145A0A059B061_EUCGR; Uncharacterized protein
STRINGXP_010026406.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14219723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.13e-23B3 family protein