PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC003213.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 364aa    MW: 40328.1 Da    PI: 4.4932
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC003213.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH331e-102903301055
                   HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  EcC003213.10 290 RKRRERINERLKILQNLIPNG-----TKVDISTMLEEAVHYVKFLQ 330
                   9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.856280329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.77E-14283345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-12285339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-11286335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.38E-11289334No hitNo description
PfamPF000105.3E-8290330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MESLGSFADG ELDLLRILFS NDEPDQYPFA SSILEDRPNF QIPPTLVDNP DKALSGMDYM  60
GGVHESLYCS SVSDLDSFNL QCFSESSFSS ACSDSFLNVP VPSLENYGTC NYVSVASDQV  120
SVFMDVCVNG GNNDSFVTDQ ETVCLGENMT GEAEIKDNDN VQPQEISAPV KALPLKRKPA  180
RSSKIASKND KTDVEMPEKP KRKPRLSSDV QKTRKKNMPA KKNQKLTSLD DDNEESNVKE  240
EGQSSSPCSS EDDVSSQELK DSKTSESLSS DVKTRAGRGA ATDPQSLYAR KRRERINERL  300
KILQNLIPNG TKVDISTMLE EAVHYVKFLQ LQIKLLSSDD LWMYAPIAYN GKDIGLDKII  360
FPQL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198204KPKRKPR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010061684.10.0PREDICTED: transcription factor bHLH85
STRINGXP_010061684.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41322257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.13e-53ROOT HAIR DEFECTIVE 6-LIKE 2