PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC002453.30

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

GRAS

Protein Properties

Length: 619aa MW: 66297.2 Da PI: 5.4748

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC002453.30	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	354	2.3e-108	252	619	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 ++Ll+cA+ vs++d ela ++Larl+e as++gdp +R+a+yf AL++rl+ +s ++++ +p +e + ++k++++++P+ kf+hlta EcC002453.30 252 LKALLDCAR-VSESDPELAAKTLARLRESASERGDPAERVAFYFSDALHSRLSLDGSPIASSTSP--------EEFTLSYKALNDACPYSKFAHLTA 339 689***9.8999***********************************966666654444........5566899************* PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192 NqaIlea+e+++++Hi+Df+i qG+QW+aLlqaLa+R+ g+p ++Ri g+ + + g + +l +tg+rL++fA+ l+++fef + + + +++l+ EcC002453.30 340 NQAILEATEKASKIHIVDFGIVQGVQWAALLQALATRSTGKPdRIRISGIPARALGenPAPSLLATGNRLREFAKLLDLNFEFVP-ILDPTDSLDAA 435 **********************************76666*****888788999********************.7****** PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289 ++rv+p+E laVn++lql++ll e+ + d+ L+l ksl Pk+v++ e ea++n++++ +rf +al yy a+f+sle +r+s +r+ vEr l EcC002453.30 436 SFRVDPDEDLAVNFMLQLYNLLGETSAA---VDAALRLSKSLGPKIVTLGEYEASLNRAPYPARFKNALAYYEAVFESLEPM-SRDSLQRREVERLL 528 ******************555555...55******************************************998.8********* PP GRAS 290 lgreivnvvacegae....rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374 lgr+iv v e rer+e +e+Wr+ +e+aGF++vpls++a++qak ll ++k s+ y+++++ ++ l W++ pL++vSaWr EcC002453.30 529 LGRRIVRSVGPEAPPgtgaERERMEDKEQWRALMERAGFEAVPLSHYAVSQAKILLWNYKySELYSLQDSPPGFLsLAWNKVPLLTVSAWR 619 *****998542222369***********************************999999777777************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	59.395	225	597	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.9E-106	252	619	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 619 aa Download sequence Send to blast
MAYMCADSGN LMAIAQQVIK QKQQQEQQQQ NQQQNPHHHH HQHHLLLGIN SFALSSPWAT 60 SASASAASAA APAAPCSNAG SPNLAAPAFP DPFQVASGSD PAFPFPSLDH HHASGGGGFR 120 FGGFGGGEFD SDEWMESLMG SGDSTPVSSS LPSACDAWSN AAADFGLYSA DPFAACPSRL 180 GSSDLNRVVS PTWGPATAPT PPPPPAAEDS KPARVSASPP RQHKGDAATA AVGTSSASAS 240 APPETEPSQP LLKALLDCAR VSESDPELAA KTLARLRESA SERGDPAERV AFYFSDALHS 300 RLSLDGSPIA SSTSPEEFTL SYKALNDACP YSKFAHLTAN QAILEATEKA SKIHIVDFGI 360 VQGVQWAALL QALATRSTGK PDRIRISGIP ARALGENPAP SLLATGNRLR EFAKLLDLNF 420 EFVPILDPTD SLDAASFRVD PDEDLAVNFM LQLYNLLGET SAAVDAALRL SKSLGPKIVT 480 LGEYEASLNR APYPARFKNA LAYYEAVFES LEPMSRDSLQ RREVERLLLG RRIVRSVGPE 540 APPGTGAERE RMEDKEQWRA LMERAGFEAV PLSHYAVSQA KILLWNYKYS ELYSLQDSPP 600 GFLSLAWNKV PLLTVSAWR

Sequence ? help Back to Top

Protein Sequence Length: 619 aa Download sequence Send to blast

MAYMCADSGN LMAIAQQVIK QKQQQEQQQQ NQQQNPHHHH HQHHLLLGIN SFALSSPWAT  60
SASASAASAA APAAPCSNAG SPNLAAPAFP DPFQVASGSD PAFPFPSLDH HHASGGGGFR  120
FGGFGGGEFD SDEWMESLMG SGDSTPVSSS LPSACDAWSN AAADFGLYSA DPFAACPSRL  180
GSSDLNRVVS PTWGPATAPT PPPPPAAEDS KPARVSASPP RQHKGDAATA AVGTSSASAS  240
APPETEPSQP LLKALLDCAR VSESDPELAA KTLARLRESA SERGDPAERV AFYFSDALHS  300
RLSLDGSPIA SSTSPEEFTL SYKALNDACP YSKFAHLTAN QAILEATEKA SKIHIVDFGI  360
VQGVQWAALL QALATRSTGK PDRIRISGIP ARALGENPAP SLLATGNRLR EFAKLLDLNF  420
EFVPILDPTD SLDAASFRVD PDEDLAVNFM LQLYNLLGET SAAVDAALRL SKSLGPKIVT  480
LGEYEASLNR APYPARFKNA LAYYEAVFES LEPMSRDSLQ RREVERLLLG RRIVRSVGPE  540
APPGTGAERE RMEDKEQWRA LMERAGFEAV PLSHYAVSQA KILLWNYKYS ELYSLQDSPP  600
GFLSLAWNKV PLLTVSAWR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-149	248	619	1	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250\|UniProtKB:Q53K16, ECO:0000250\|UniProtKB:Q9SCR0, ECO:0000269\|PubMed:20616154}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269\|PubMed:20616154}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010029812.1	0.0	PREDICTED: scarecrow-like protein 4
Swissprot	A0A024B7I0	0.0	SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBL	A0A059ASL9	0.0	A0A059ASL9_EUCGR; Uncharacterized protein (Fragment)
STRING	XP_010029812.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66770.1	0.0	GRAS family protein