PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC002385.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

MYB

Protein Properties

Length: 337aa MW: 37697.4 Da PI: 6.9229

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC002385.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.3	8.2e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l++ ++++G g+W++ ++ g++R++k+c++rw +yl EcC002385.10 14 KGPWTPEEDQKLIKHIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	55.3	1.5e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ +++++ lG++ W++Ia +++ gRt++++k++w+++l EcC002385.10 67 RGKFSPEEEQTILNLHSILGNK-WSAIAGHLP-GRTDNEIKNFWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.4E-27	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.744	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.32E-32	11	108	IPR009057	Homeodomain-like
SMART	SM00717	3.5E-16	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	8.0E-18	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	3.08E-13	16	61	No hit	No description
PROSITE profile	PS51294	26.638	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.9E-28	65	117	IPR009057	Homeodomain-like
SMART	SM00717	1.9E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.9E-16	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	2.08E-12	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MGRSPCCDES GLKKGPWTPE EDQKLIKHIQ KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SPEEEQTILN LHSILGNKWS AIAGHLPGRT DNEIKNFWNT HLKKKLIQMG 120 FDPMTHRPRT DIFSSLPHLL ALVNLKELID HHSLEEQARL QAEAINKFQY LQYLLQPPTP 180 PVSLTPTTSN NVVTDDVETM KLLNAFASIK ENQMMTLSSS PSPSQLEATA HSLFGNAPVS 240 PVHDSYPFAH LPELQNPCSF QTNLSKDHDN NNNNTMVQAS EFAIFSQGEN SPNSPWLPSS 300 STPSPPAETS FTNTFNSDGG AVSSIWPDHL LDDFNFS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	6e-30	12	116	5	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250\|UniProtKB:Q9M2D9}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by gravity in roots. {ECO:0000269\|PubMed:24902892}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010027860.1	0.0	PREDICTED: transcription factor MYB34
Swissprot	Q9SBF3	1e-107	MYB92_ARATH; Transcription factor MYB92
TrEMBL	A0A059AKZ8	0.0	A0A059AKZ8_EUCGR; Uncharacterized protein
STRING	XP_010027860.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10280.1	6e-99	myb domain protein 92

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]