PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC002323.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

WRKY

Protein Properties

Length: 104aa MW: 11682.9 Da PI: 8.4769

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC002323.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	33.1	1.1e-10	83	104	1	22
---SS-EEEEEEE--TT-SS-E CS WRKY 1 ldDgynWrKYGqKevkgsefpr 22 +dDg++WrKYG+K+vk+s++pr EcC002323.10 83 MDDGFKWRKYGKKSVKNSPNPR 104 69*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.5E-11	71	104	IPR003657	WRKY domain
SuperFamily	SSF118290	1.06E-8	75	104	IPR003657	WRKY domain
PROSITE profile	PS50811	13.069	78	104	IPR003657	WRKY domain
Pfam	PF03106	2.5E-6	84	104	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 104 aa Download sequence Send to blast
MNGHQDPNPN NTRFEDMVDL SEFQLSDYLL LEGDFEGDLS AKTMANSEEN SAGSSNGRCK 60 RGKNKSGTGM RVAFRTKSEL EVMDDGFKWR KYGKKSVKNS PNPR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010027762.1	4e-64	PREDICTED: probable WRKY transcription factor 51 isoform X1
Swissprot	Q93WU9	7e-17	WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBL	A0A059ALT4	1e-62	A0A059ALT4_EUCGR; Uncharacterized protein
STRING	XP_010027762.1	2e-63	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5711	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	4e-16	WRKY DNA-binding protein 50

Publications ? help Back to Top
Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]