PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC001878.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

TALE

Protein Properties

Length: 370aa MW: 41191.6 Da PI: 7.0732

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC001878.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.1	3.4e-09	111	148	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + EcC001878.10 111 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 148 564459******************************88 PP
2	BELL	62.4	1e-20	1	43	30	72
BELL 30 lqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +++v+ssFeavag g+a++Y +lA+ka+SrhFrcL+d i++qi EcC001878.10 1 MKAVVSSFEAVAGSGAATVYSALASKAMSRHFRCLRDGIVGQI 43 89***************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07526	1.2E-15	1	39	IPR006563	POX domain
PROSITE profile	PS50071	12.163	89	152	IPR001356	Homeobox domain
SMART	SM00389	5.8E-9	92	156	IPR001356	Homeobox domain
CDD	cd00086	8.73E-13	92	153	No hit	No description
SuperFamily	SSF46689	1.63E-17	93	160	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.7E-28	95	159	IPR009057	Homeodomain-like
Pfam	PF05920	4.2E-18	109	148	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MKAVVSSFEA VAGSGAATVY SALASKAMSR HFRCLRDGIV GQIQATKKAM GEKDLASPGT 60 TRGETPRLKI IDQALRQQRA FQQMTMMDNH PWRPQRGLPE RSVSVLRAWL FEHFLHPYPS 120 DVDKHILARQ TGLSRSQVSN WFINARVRLW KPMVEEMYME ETREHDNMGS SDGAADLEDD 180 GRPNNHNREA TRVEDQKPTS DQLVRIDSEC FSSIVTSPDK SDQHHHSKMA ATRAPQNHHH 240 HHHHHHHLHP QNSGFGRVSD AYGGMEIDFS SYNHHPVTSA APYSNDGDAS HQNFNGSGGG 300 VSLTLGLQQH GGPSHGVSLA FSSVSQNSLF YPRDHIEDCH PVQYSLLDGE GQTLPYRNLM 360 GAQLLHDLAG

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MKAVVSSFEA VAGSGAATVY SALASKAMSR HFRCLRDGIV GQIQATKKAM GEKDLASPGT  60
TRGETPRLKI IDQALRQQRA FQQMTMMDNH PWRPQRGLPE RSVSVLRAWL FEHFLHPYPS  120
DVDKHILARQ TGLSRSQVSN WFINARVRLW KPMVEEMYME ETREHDNMGS SDGAADLEDD  180
GRPNNHNREA TRVEDQKPTS DQLVRIDSEC FSSIVTSPDK SDQHHHSKMA ATRAPQNHHH  240
HHHHHHHLHP QNSGFGRVSD AYGGMEIDFS SYNHHPVTSA APYSNDGDAS HQNFNGSGGG  300
VSLTLGLQQH GGPSHGVSLA FSSVSQNSLF YPRDHIEDCH PVQYSLLDGE GQTLPYRNLM  360
GAQLLHDLAG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrm_A	6e-16	98	156	5	63	Homeobox protein Meis2
4xrm_B	6e-16	98	156	5	63	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269\|PubMed:12244239, ECO:0000269\|PubMed:17693535, ECO:0000269\|PubMed:22786869}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010053224.1	0.0	PREDICTED: homeobox protein BEL1 homolog
Swissprot	Q38897	1e-111	BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBL	A0A059CGZ0	0.0	A0A059CGZ0_EUCGR; Uncharacterized protein
STRING	XP_010053224.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5866	26	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41410.1	1e-108	TALE family protein

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684] Lozano-Sotomayor P, et al. Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Plant J., 2016. 88(3): p. 437-451 [PMID:27402171]