PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC000836.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

ARR-B

Protein Properties

Length: 1130aa MW: 126601 Da PI: 4.5297

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC000836.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	44.6	3.2e-14	295	344	4	55
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +W+peLH +F a++ LG + + Pktil++m+v+ L ++v SHLQ+ R EcC000836.20 295 AVWSPELHPNFTAALSALG--DDTRPKTILKTMDVPYLNHHQVTSHLQRCRA 344 68**************4..4578*********************9986 PP
2	Response_reg	23.9	2.1e-09	40	140	8	108
HHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS- CS Response_reg 8 plvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpf 102 + +r l+ ++++++ + v+ ++ ++ al +++ek+ + l++ i+ + + + +l e+ +ee +p+i+++a++ +++a + l +Ga+ fl Kp EcC000836.20 40 DQIRVLIPRVITDQSLPLVTGTELPSVALSIIQEKKnwFKLVMANIDKINDENFSILCELMKEE--IPVILMSANQHKNTAGRSLAVGASYFLYKPL 134 56677777777777777888899999999999888888*****9999999999999998877..9************************** PP -HHHHH CS Response_reg 103 dpeelv 108 +pe+l EcC000836.20 135 SPENLK 140 *986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF52172	7.75E-10	11	72	IPR011006	CheY-like superfamily
PROSITE profile	PS50110	17.714	13	147	IPR001789	Signal transduction response regulator, receiver domain
Gene3D	G3DSA:3.40.50.2300	8.2E-11	13	173	No hit	No description
CDD	cd00156	8.28E-8	15	147	No hit	No description
Pfam	PF00072	3.4E-5	40	140	IPR001789	Signal transduction response regulator, receiver domain
SuperFamily	SSF52172	7.75E-10	102	156	IPR011006	CheY-like superfamily
Gene3D	G3DSA:1.10.10.60	3.8E-14	290	344	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-12	294	344	IPR006447	Myb domain, plants
SuperFamily	SSF46689	2.33E-7	294	343	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1130 aa Download sequence Send to blast
MLNSVPSFAR GLPLLLVDHD PTSLASTRSL LGRYFFNEED QIRVLIPRVI TDQSLPLVTG 60 TELPSVALSI IQEKKNWFKL VMANIDKIND ENFSILCELM KEEIPVILMS ANQHKNTAGR 120 SLAVGASYFL YKPLSPENLK VLWQHAFRRR MIVPTEKRNT RSVKSQGKEV LRKEHSPDKK 180 IDKATRTQEA SVDQLRKKRG HIAEGDQVDE RCTEKPKVGK SRFAPLNVKG KGTTLEAGAK 240 RSNDGKDNER EHERTRIDSE RVDSNHVSEE GWNTDYREDD SIGTSSSGRR RMRQAVWSPE 300 LHPNFTAALS ALGDDTRPKT ILKTMDVPYL NHHQVTSHLQ RCRAQDWFST ACLDLDAIVH 360 ILQFAICTTL SDSCSPFQKH RNQVQRLCNI ASASNLPSDG QSGGSNRSVE PHQQPDTHAS 420 VSGQVGQASV DFRSGGSADT SQQYFLPSPQ LSFNSSSPIP NQVPQQAQNQ YPQLSDFPAN 480 PSEQSSQSSH CEKLHNGSQA SSHNLNCPGE HSNLSNDNFN VNQGLNGNEE STYQVPWTDL 540 PNIHSINPVV DPTAFASLSM PPRVEGSMVL PEPVSRLQNQ TMSLTAVTDN AAPTVSPQVG 600 VEDIITGLAE IFRPLQKQHL WTELCDSSDL VDLQHHPQFD SLLDEVDTPS VPPELGREIN 660 YYTEFASLIS PQQTSNNLLP SQGNQYEAMN KGLTQSLAGS NLVPYQENQY NVMDQGLDLV 720 AEVEPQPQAC FMNQSLTSNN PAPSQENQYH VMNKGLDLIL EAEPQPQAWF MNQPLNSDNP 780 APSQENQYHF MNQGLDLVPE AEPQPQAWFM NQSLTSDNPV HFQENSYHVM NQGLDLVPEA 840 EPQPQAWFMN QSLTGDNLMS SQDNPQYVMN QELNLEVDPH LKAWFMNQTQ TGDNPVTCQE 900 NRCHVMNQGL DLIAEAEPQP QAWFMNQTQT GDNLVPSPEN QHYVMNQGLN LHAEPQPEAW 960 YINQSQTSDN PLTCQENQWD VMNQGLDLVA EVERQPEAGF MNQSLTGDNL MPSSENQHRV 1020 MNQGLNVEVE AQPGAQFTNQ TLTDYNPVTS QENQYYVMSQ GSDLVAEVEL QPQAQACFMK 1080 QPQSNYDVPL RLDGMEDLRD LLDEPMLDEI NHFSEWLADI LRGNDNPIIG

Sequence ? help Back to Top

Protein Sequence Length: 1130 aa Download sequence Send to blast

MLNSVPSFAR GLPLLLVDHD PTSLASTRSL LGRYFFNEED QIRVLIPRVI TDQSLPLVTG  60
TELPSVALSI IQEKKNWFKL VMANIDKIND ENFSILCELM KEEIPVILMS ANQHKNTAGR  120
SLAVGASYFL YKPLSPENLK VLWQHAFRRR MIVPTEKRNT RSVKSQGKEV LRKEHSPDKK  180
IDKATRTQEA SVDQLRKKRG HIAEGDQVDE RCTEKPKVGK SRFAPLNVKG KGTTLEAGAK  240
RSNDGKDNER EHERTRIDSE RVDSNHVSEE GWNTDYREDD SIGTSSSGRR RMRQAVWSPE  300
LHPNFTAALS ALGDDTRPKT ILKTMDVPYL NHHQVTSHLQ RCRAQDWFST ACLDLDAIVH  360
ILQFAICTTL SDSCSPFQKH RNQVQRLCNI ASASNLPSDG QSGGSNRSVE PHQQPDTHAS  420
VSGQVGQASV DFRSGGSADT SQQYFLPSPQ LSFNSSSPIP NQVPQQAQNQ YPQLSDFPAN  480
PSEQSSQSSH CEKLHNGSQA SSHNLNCPGE HSNLSNDNFN VNQGLNGNEE STYQVPWTDL  540
PNIHSINPVV DPTAFASLSM PPRVEGSMVL PEPVSRLQNQ TMSLTAVTDN AAPTVSPQVG  600
VEDIITGLAE IFRPLQKQHL WTELCDSSDL VDLQHHPQFD SLLDEVDTPS VPPELGREIN  660
YYTEFASLIS PQQTSNNLLP SQGNQYEAMN KGLTQSLAGS NLVPYQENQY NVMDQGLDLV  720
AEVEPQPQAC FMNQSLTSNN PAPSQENQYH VMNKGLDLIL EAEPQPQAWF MNQPLNSDNP  780
APSQENQYHF MNQGLDLVPE AEPQPQAWFM NQSLTSDNPV HFQENSYHVM NQGLDLVPEA  840
EPQPQAWFMN QSLTGDNLMS SQDNPQYVMN QELNLEVDPH LKAWFMNQTQ TGDNPVTCQE  900
NRCHVMNQGL DLIAEAEPQP QAWFMNQTQT GDNLVPSPEN QHYVMNQGLN LHAEPQPEAW  960
YINQSQTSDN PLTCQENQWD VMNQGLDLVA EVERQPEAGF MNQSLTGDNL MPSSENQHRV  1020
MNQGLNVEVE AQPGAQFTNQ TLTDYNPVTS QENQYYVMSQ GSDLVAEVEL QPQAQACFMK  1080
QPQSNYDVPL RLDGMEDLRD LLDEPMLDEI NHFSEWLADI LRGNDNPIIG

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20051	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68210.1	3e-24	pseudo-response regulator 6