PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC000151.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 135aa    MW: 16046.3 Da    PI: 8.4845
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC000151.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS104.71.3e-325132246373
          GRAS 246 adhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                    ++n++ F +rf eal  +sa++d l+a++ ++++er ++Ere+ grei+nv+aceg++r+e+ et+++W+ r  +aGFk++pl+++ +k  +  ++
  EcC000151.10   5 GSYNAAFFETRFREALFEFSAVYDLLDATIDHNNKERLVIEREFHGREIMNVIACEGSRRIEKPETYKQWQVRHVRAGFKALPLDQDFMKLFRGKMK 101
                   678********************************************************************************************** PP

          GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     + + + ++e+ ++++++W++r  +  S+W
  EcC000151.10 102 AWYHKDFVLDEDGNWMLQCWRGRISFGSSCW 132
                   ***888************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098520.8351113IPR005202Transcription factor GRAS
PfamPF035144.6E-305132IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
AVRSGSYNAA FFETRFREAL FEFSAVYDLL DATIDHNNKE RLVIEREFHG REIMNVIACE  60
GSRRIEKPET YKQWQVRHVR AGFKALPLDQ DFMKLFRGKM KAWYHKDFVL DEDGNWMLQC  120
WRGRISFGSS CWVPT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018724295.11e-94PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 34
SwissprotQ3EDH03e-57SCL31_ARATH; Scarecrow-like protein 31
TrEMBLA0A059D5Q95e-95A0A059D5Q9_EUCGR; Uncharacterized protein
STRINGXP_010043534.15e-80(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07520.11e-59GRAS family protein