PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dusal.2241s00001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
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Family | C3H | ||||||||
Protein Properties | Length: 86aa MW: 9725.27 Da PI: 9.0801 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.8 | 1.4e-11 | 6 | 32 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++ C+ff++tG+C++Gd+C + H++ Dusal.2241s00001.1.p 6 PGRTACDFFLKTGHCRFGDTCVYDHPE 32 57899********************96 PP | |||||||
2 | zf-CCCH | 26.5 | 1.1e-08 | 48 | 73 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ C ++++ +CkyG+ Ck +H+p Dusal.2241s00001.1.p 48 EQPVCAYYLKHAECKYGPACKWHHPP 73 5799********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.737 | 5 | 33 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.3E-6 | 5 | 32 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-9 | 7 | 32 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.63E-7 | 7 | 33 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.4E-5 | 11 | 33 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.15 | 46 | 73 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.69 | 46 | 74 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.06E-5 | 46 | 72 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-6 | 49 | 73 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.1E-4 | 51 | 72 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0017148 | Biological Process | negative regulation of translation | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0048027 | Molecular Function | mRNA 5'-UTR binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 86 aa Download sequence Send to blast |
TYPRRPGRTA CDFFLKTGHC RFGDTCVYDH PEHAAVRLTQ MGLPLRPEQP VCAYYLKHAE 60 CKYGPACKWH HPPLRPVFAG SLLRS* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002958109.1 | 1e-36 | hypothetical protein VOLCADRAFT_107956 | ||||
Swissprot | Q5JLB5 | 2e-20 | C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12 | ||||
TrEMBL | D8UHE6 | 2e-35 | D8UHE6_VOLCA; Uncharacterized protein | ||||
STRING | XP_002958109.1 | 4e-36 | (Volvox carteri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP13729 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 2e-20 | zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Dusal.2241s00001.1.p |
Publications ? help Back to Top | |||
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