PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dusal.0545s00011.1.p
Organism
Dunaliella salina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
Family C3H
Protein Properties Length: 555aa    MW: 60717.3 Da    PI: 7.1705
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dusal.0545s00011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.78.5e-0881102526
                           --SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                            C+ ++r+G Ck+Gd C+FaHg
  Dusal.0545s00011.1.p  81 ACPEYRRNGCCKRGDACPFAHG 102
                           7********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902298.44E-576106IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-576103IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.55476104IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-681102IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-482104IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-4109141IPR000571Zinc finger, CCCH-type
SMARTSM0035665112135IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MPALLKSMAH GTETHGEALP LDEQESILEE DETSDAFRMY QYKVKQCCKV RPHDWCSCVY  60
SHPGEKAKRR NPLTFTYSGT ACPEYRRNGC CKRGDACPFA HGVFECWLHP TRYRTQMCSD  120
GVNCKRRICF FAHTEAELRK PEDDPLWLQQ QLQMELGTEP LGAPGLAEPV QQGNLDVLLN  180
AQLTELQQQQ QQQQQEEDAA FGERIREVIG QFATQGKGLT QSQMMQVLQV LAEQQQQQEQ  240
QQQQPAARLP FAQHGRSSLP NPSTLSQAQA LQQHLGPAKG IAGRQLAGRQ VDTVGSAHPL  300
PPATRALSDP QVQLPDNWAA TPSMPPHQQQ QQVQQQQQQP QLPNLPEELR ASMLAQQLHA  360
LQIAQQGLQA SQNKNKDAAP AHVRSSQSAP GNMFIPMPCP SMNLLDSMQQ QQQLRPSPSS  420
SMPSSALQQP CPLSPTPGTA SIRARGPSLE PSVPPGKVAD LAQQVLALQE GSKQQQQQRV  480
GDRGFVLGGH SRLLLEGDPV AAQVYSAPEN ASSLLSSPRH TGSGSPPLRT SSNLSLADAQ  540
LVGVVLSAQR SRFV*
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP601532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.17e-51C3H family protein