PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dusal.0320s00012.1.p
Organism
Dunaliella salina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
Family GATA
Protein Properties Length: 519aa    MW: 56169.4 Da    PI: 7.0901
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dusal.0320s00012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA41.41.9e-13840133
                  GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33
                          C++Cg+++Tp+ R gp g+ tLCnaCG++ ++ 
  Dusal.0320s00012.1.p  8 CVQCGVKDTPQRRTGPAGPQTLCNACGVRLKRG 40
                          *****************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004017.1E-6253IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-9444No hitNo description
Gene3DG3DSA:3.30.50.109.6E-11742IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.18E-10751No hitNo description
PROSITE profilePS501149.13738IPR000679Zinc finger, GATA-type
PfamPF003201.4E-10839IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MSGHHWQCVQ CGVKDTPQRR TGPAGPQTLC NACGVRLKRG NIPQKKRAAK RKGTAPLLEQ  60
QHPKQPRHKG QSASGTDSDF EEDEEGVKQA NEEESSDSSE ARPSARRRKG RRRPQRKAAQ  120
ACASHTAQLV QTGMLDPVLA KAEARGAGSS DSMEGDSMAF SSGEHTPRRA PGKRSAISKK  180
QQQAGVMPPQ LLPFQPFPIL QPWQTPQGQT EAEPPAAWLG FFMQQLLQQQ QQQQQQQQGQ  240
RLQQDCFVRT QQQFQQNLQQ QQQQQQPQQL QEQLQQQQQQ QQSAQALQPQ GDGVHSKEQE  300
QQELAARQGS FESSTSAVEG GADGVVDGAC GAKKNSPAAA LSVPLPTAAA TASGTAGLVL  360
DSPRAAESFP VGVIPTPPGV IMPPPWARQH RGGPQADPTP ARPLDLGYVK SSAEQAAAAA  420
EAAELAVAEA QKVLLERQQA AELARRNASS AARRLSELMS GADPLHTQLL QHERTSWLGK  480
GLHTRMDDDE QDEGEMVLEM PTLYGELPAD ELSLWGSQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP2201430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.12e-11GATA transcription factor 1