PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Dusal.0320s00012.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 519aa MW: 56169.4 Da PI: 7.0901 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 41.4 | 1.9e-13 | 8 | 40 | 1 | 33 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 C++Cg+++Tp+ R gp g+ tLCnaCG++ ++ Dusal.0320s00012.1.p 8 CVQCGVKDTPQRRTGPAGPQTLCNACGVRLKRG 40 *****************************9975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 7.1E-6 | 2 | 53 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 7.6E-9 | 4 | 44 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 9.6E-11 | 7 | 42 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 6.18E-10 | 7 | 51 | No hit | No description |
PROSITE profile | PS50114 | 9.13 | 7 | 38 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.4E-10 | 8 | 39 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 519 aa Download sequence Send to blast |
MSGHHWQCVQ CGVKDTPQRR TGPAGPQTLC NACGVRLKRG NIPQKKRAAK RKGTAPLLEQ 60 QHPKQPRHKG QSASGTDSDF EEDEEGVKQA NEEESSDSSE ARPSARRRKG RRRPQRKAAQ 120 ACASHTAQLV QTGMLDPVLA KAEARGAGSS DSMEGDSMAF SSGEHTPRRA PGKRSAISKK 180 QQQAGVMPPQ LLPFQPFPIL QPWQTPQGQT EAEPPAAWLG FFMQQLLQQQ QQQQQQQQGQ 240 RLQQDCFVRT QQQFQQNLQQ QQQQQQPQQL QEQLQQQQQQ QQSAQALQPQ GDGVHSKEQE 300 QQELAARQGS FESSTSAVEG GADGVVDGAC GAKKNSPAAA LSVPLPTAAA TASGTAGLVL 360 DSPRAAESFP VGVIPTPPGV IMPPPWARQH RGGPQADPTP ARPLDLGYVK SSAEQAAAAA 420 EAAELAVAEA QKVLLERQQA AELARRNASS AARRLSELMS GADPLHTQLL QHERTSWLGK 480 GLHTRMDDDE QDEGEMVLEM PTLYGELPAD ELSLWGSQ* |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00377 | DAP | Transfer from AT3G24050 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP220 | 14 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G24050.1 | 2e-11 | GATA transcription factor 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Dusal.0320s00012.1.p |