PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dusal.0302s00002.1.p

Organism

Dunaliella salina

Taxonomic ID

3046

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella

Family

MYB

Protein Properties

Length: 438aa MW: 49409.6 Da PI: 8.8702

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dusal.0302s00002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.5	3.2e-13	7	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.........TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.........kgRtlkqcksrwqkyl 48 rg W+ Ede l+++v +G g+W++Ia++++ gR +kqc++rw+ +l Dusal.0302s00002.1.p 7 RGTWSSYEDESLKRLVSIHGEGHWSKIAQHLNeecgvgegsCGRIGKQCRERWLHHL 63 89*************************************9*********9875 PP
2	Myb_DNA-binding	46.5	8.4e-15	71	111	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +W++ E +lv +++qlG++ +++Ia++++ gRt+++ck++w+ Dusal.0302s00002.1.p 71 PWSEAEAVQLVSLHEQLGNH-FSAIAKYLP-GRTENSCKNFWN 111 8*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	21.68	1	67	IPR017930	Myb domain
SuperFamily	SSF46689	2.95E-25	5	110	IPR009057	Homeodomain-like
SMART	SM00717	5.0E-12	6	65	IPR001005	SANT/Myb domain
Pfam	PF00249	2.4E-12	7	62	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-19	8	70	IPR009057	Homeodomain-like
CDD	cd00167	8.32E-10	9	63	No hit	No description
SMART	SM00717	2.4E-12	68	116	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	13.975	69	118	IPR017930	Myb domain
Pfam	PF00249	1.9E-13	71	111	IPR001005	SANT/Myb domain
CDD	cd00167	4.87E-11	71	111	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.1E-17	71	113	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
MPRAKKRGTW SSYEDESLKR LVSIHGEGHW SKIAQHLNEE CGVGEGSCGR IGKQCRERWL 60 HHLQPGICHT PWSEAEAVQL VSLHEQLGNH FSAIAKYLPG RTENSCKNFW NATRRCKAPD 120 TRARAIVKAY VDALEQQQQQ QLPPQQQQQQ QQQQQRQRRQ KQQQQEQQQL HTSQLQPLKS 180 QQQNNLTMRQ FRKQQQQQQQ QQQLPLPNLD PCTRINSNSS SSSSCSSSGG HSFGNKASQA 240 QQEGRNSADA ASTPSHSSDS SSILHDFCPP PCSPAAALRP SAHAQPSQPR QQHPQSRFLQ 300 SLQQQLMQLQ QQRQREVWQQ QQQQRQQQQQ FQVPIAAPCD HPDPAPRQQD QEQQHMGIFP 360 CAPSATEAQE LPNRIQHAAQ PRQLCSQDAV QLHLPHSQGA AQLRLLHSQD LNGQSTQPVG 420 QEDLQAAAHL LALRALS*

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

MPRAKKRGTW SSYEDESLKR LVSIHGEGHW SKIAQHLNEE CGVGEGSCGR IGKQCRERWL  60
HHLQPGICHT PWSEAEAVQL VSLHEQLGNH FSAIAKYLPG RTENSCKNFW NATRRCKAPD  120
TRARAIVKAY VDALEQQQQQ QLPPQQQQQQ QQQQQRQRRQ KQQQQEQQQL HTSQLQPLKS  180
QQQNNLTMRQ FRKQQQQQQQ QQQLPLPNLD PCTRINSNSS SSSSCSSSGG HSFGNKASQA  240
QQEGRNSADA ASTPSHSSDS SSILHDFCPP PCSPAAALRP SAHAQPSQPR QQHPQSRFLQ  300
SLQQQLMQLQ QQRQREVWQQ QQQQRQQQQQ FQVPIAAPCD HPDPAPRQQD QEQQHMGIFP  360
CAPSATEAQE LPNRIQHAAQ PRQLCSQDAV QLHLPHSQGA AQLRLLHSQD LNGQSTQPVG  420
QEDLQAAAHL LALRALS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h88_C	7e-25	7	118	58	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	7e-25	7	118	58	159	MYB PROTO-ONCOGENE PROTEIN

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP15	16	114

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27785.1	2e-27	myb domain protein 118

Link Out ? help Back to Top
Phytozome	Dusal.0302s00002.1.p