PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dusal.0010s00015.1.p
Organism
Dunaliella salina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
Family GATA
Protein Properties Length: 616aa    MW: 63511.3 Da    PI: 8.0698
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dusal.0010s00015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA44.12.9e-14579610132
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 
                           C+ C++  Tp WR gp g+ktLCnaCG++y k
  Dusal.0010s00015.1.p 579 CTACKVNATPVWRTGPHGPKTLCNACGVRYTK 610
                           ******************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.47E-10571612No hitNo description
PROSITE profilePS5011411.227573608IPR000679Zinc finger, GATA-type
SMARTSM004014.9E-5573615IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.5E-11578610IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.67E-8579610No hitNo description
PfamPF003201.5E-12579610IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MIPPSEAAGP ALSHYPELSS SSNSESSMCT AFELGRTHSK GASQVSAPPT VTHLTVKVEE  60
PQPTRSSVPK DMGYVAIGAQ VQKQQQQQEK VLPMPVAGAG FAHPTPTHTN PPSSWPPEAM  120
AQPAPSAPHV GTRPAPLTID AGSLAARLAM DAGSPKHESS TAVAIPCVPA PSMERSMEPT  180
PVEGGGRISP DFSSCEKPAV EQQQQLLLQP TKVPASQVAA AADAVSAAQG TNNTRHTKRT  240
PVPSVRLQRM LEGDAPVPPK RQQQPKKKQQ GGSSASGVVG GFATLGSKRG ADEPHEHALL  300
LQHQNGGGSS SFGGVDARRT KPRLQLGSSK ACGGGGGSST ASVAAAGAGF ALNQGMFAWP  360
DEQEEVMSGG SQHPDALDVG RGSGGPSFLC EEPFFVGPEG GPTGLMPMGL TSAGDLPVSA  420
LNAPSAAAMW APSGFGTQGE DTGIDLQLPT DLLEVAAELA AAADKEGEGH GIHGSSAIRS  480
TNQRQHLHSM MVSSSTHARL QGLGNRPRPV PHCNTARVVA PQPPQQPQRC LTPEDYDGHI  540
DSENGLPQVP PPRLPAGQPR GAPRPPARVL VPHPTGGCCT ACKVNATPVW RTGPHGPKTL  600
CNACGVRYTK VVRRK*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00110ampDAPTransfer from AT2G18380Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP43691012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.13e-11GATA transcription factor 23