PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do029579.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 320aa    MW: 34439.9 Da    PI: 7.5385
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do029579.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY81.39.9e-26108166259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +D y+WrKYGqKe+ g++fprsY++C  + gCp++k+v++s+ +p+ +eitY + H+++
  Do029579.1 108 QDSYTWRKYGQKEILGARFPRSYFKCGRKsGCPARKHVQQSDANPSKLEITYLDAHTCD 166
                 8**************************999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.4E-25101168IPR003657WRKY domain
PROSITE profilePS5081121.333102168IPR003657WRKY domain
SuperFamilySSF1182901.7E-22105168IPR003657WRKY domain
SMARTSM007742.9E-30107167IPR003657WRKY domain
PfamPF031061.5E-23108166IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MERFIVGAQK STNQLRAVLA KLLPAAGGAR AGAGSSPSGS AVDDLLSDIT DSLSQALASL  60
RFGALDTQRP PGQSSTGGGG RRSAPRRSAQ RLRMDGACRM IVLQNEVQDS YTWRKYGQKE  120
ILGARFPRSY FKCGRKSGCP ARKHVQQSDA NPSKLEITYL DAHTCDDPPP SSSSHIVPYP  180
RIISTGRQRN AAPLAPVAAV PSAHQRYIGQ PSSLVHFVPE LMIASSNVRR TTGVLLPVAA  240
AVPAALSSTQ YDPVPDDDTT FTPSMEEEQA EVLFIPSPAC SQSELLPTED AKVELHGPPL  300
WMEHEVERAT ISDFMVVPEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-151091711880Disease resistance protein RRS1
5w3x_D4e-151091711880Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo029579.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804239.11e-112probable WRKY transcription factor 54
TrEMBLA0A1E5VKF70.0A0A1E5VKF7_9POAL; Uncharacterized protein
STRINGPavir.Bb01218.1.p1e-118(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141862125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.13e-18WRKY DNA-binding protein 55