PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do029563.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 209aa    MW: 22994 Da    PI: 6.5084
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do029563.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.43.4e-2474133157
                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--S CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHn 57 
                 +dDgy+WrKYG K+++  ++pr Y+rC+++   gC+++k+ver +edp+ +++ Y geH+
  Do029563.1  74 MDDGYSWRKYGEKSIHHHKNPRFYFRCAYKgdlGCSARKQVERMEEDPSQFHTAYFGEHT 133
                 59***************************99999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-2368134IPR003657WRKY domain
PROSITE profilePS5081122.83769137IPR003657WRKY domain
SuperFamilySSF1182901.27E-2271136IPR003657WRKY domain
SMARTSM007746.2E-2874138IPR003657WRKY domain
PfamPF031063.6E-2275133IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MAEAREATVR LLALLQATSA DPGKQELARQ IISCIDRALA AARGAGHDSR PPAGSRRRPR  60
GCGEARARTV SPIMDDGYSW RKYGEKSIHH HKNPRFYFRC AYKGDLGCSA RKQVERMEED  120
PSQFHTAYFG EHTPACPRDA LVVAEVDSRF VSFTPCLPAE GKELPLNMVE FTADLKDQLA  180
NLVSSDVSFA SPGELESLGA SVEELMDLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-1874133867OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo029563.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810145.12e-93probable WRKY transcription factor 38
TrEMBLA0A1E5WHG11e-153A0A1E5WHG1_9POAL; Uncharacterized protein
STRINGPavir.J05250.1.p6e-93(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1869769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.13e-18WRKY DNA-binding protein 46