PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do029300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 123aa MW: 13638.8 Da PI: 9.806 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 36.6 | 5.9e-12 | 83 | 117 | 11 | 45 |
HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgk 45 f kRr g++ KA EL LC+a a i+fs++gk Do029300.1 83 MCFFKRRSGLFSKATELAALCGAHNAFIMFSPSGK 117 5799******************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.44E-15 | 65 | 121 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 18.208 | 65 | 123 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.6E-10 | 65 | 121 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-10 | 67 | 87 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.9E-17 | 75 | 120 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-10 | 87 | 102 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-10 | 102 | 123 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
MAARTVLYSL CFSAPGFTVP RLEVPEAPGK VNAGNDRNAA ALRRRSHCWN KPDLVAVQSE 60 EENVLGRQKI EVRPVERPDA LHMCFFKRRS GLFSKATELA ALCGAHNAFI MFSPSGKPYS 120 VFM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do029300.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025813008.1 | 1e-17 | MADS-box protein AGL71-like | ||||
TrEMBL | A0A1E5W626 | 3e-86 | A0A1E5W626_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Da00904.1.p | 9e-19 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01530.1 | 2e-14 | AGAMOUS-like 28 |