PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do029190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | ERF | ||||||||
Protein Properties | Length: 88aa MW: 9512.89 Da PI: 12.2967 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.4 | 4.1e-19 | 1 | 49 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++GVr+++ +grW+AeIr+p r +r++ g+f taeeAa+a++aa ++++ Do029190.1 1 FRGVRQRP-WGRWAAEIREPQ----RgRRVWPGTFNTAEEAAAAYVAACLRIHR 49 79******.**********92....46*********************999985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.61E-13 | 1 | 57 | No hit | No description |
PRINTS | PR00367 | 3.1E-10 | 1 | 12 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-25 | 1 | 57 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-24 | 1 | 63 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.3E-14 | 1 | 48 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.679 | 1 | 57 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.38E-19 | 1 | 58 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.1E-10 | 23 | 39 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 88 aa Download sequence Send to blast |
FRGVRQRPWG RWAAEIREPQ RGRRVWPGTF NTAEEAAAAY VAACLRIHRP GASTNLPPRP 60 SAGDTGPLPP PAASLLPPRP PPPPPAPR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-17 | 1 | 64 | 6 | 70 | ATERF1 |
3gcc_A | 5e-17 | 1 | 64 | 6 | 70 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do029190.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023007232.1 | 1e-22 | pathogenesis-related genes transcriptional activator PTI6-like | ||||
Swissprot | O04682 | 5e-20 | PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6 | ||||
TrEMBL | A0A1E5WJI2 | 4e-52 | A0A1E5WJI2_9POAL; Uncharacterized protein (Fragment) | ||||
STRING | Gorai.006G260300.1 | 3e-20 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14299 | 20 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11140.1 | 3e-17 | cytokinin response factor 1 |