PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do029136.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | TCP | ||||||||
Protein Properties | Length: 70aa MW: 7341.45 Da PI: 5.6494 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 75.9 | 1.2e-23 | 1 | 57 | 24 | 79 |
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesss 79 ++a+c ++F+L +eLG+++d++ti+WLlqqa+pai ++tgt++++a+++ a+s + Do029136.1 1 MPALCVVQVFQLMRELGHKTDGETIDWLLQQAEPAIVAATGTGTIPANFSsLAVSLR 57 9**********************************************8885444444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 18.074 | 1 | 39 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 4.1E-20 | 1 | 57 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 70 aa Download sequence Send to blast |
MPALCVVQVF QLMRELGHKT DGETIDWLLQ QAEPAIVAAT GTGTIPANFS SLAVSLRFGA 60 LQPSSASRAA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do029136.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT063432 | 2e-62 | BT063432.1 Zea mays full-length cDNA clone ZM_BFc0063A06 mRNA, complete cds. | |||
GenBank | KJ726897 | 2e-62 | KJ726897.1 Zea mays clone pUT3442 TCP transcription factor (TCP2) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004978832.1 | 9e-35 | transcription factor PCF3 | ||||
Swissprot | Q53PH2 | 2e-30 | PCF3_ORYSJ; Transcription factor PCF3 | ||||
TrEMBL | A0A1E5V2U4 | 2e-43 | A0A1E5V2U4_9POAL; Transcription factor PCF3 | ||||
STRING | Si026501m | 1e-34 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4934 | 26 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G58100.1 | 3e-31 | TCP family protein |