PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do028959.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

NAC

Protein Properties

Length: 305aa MW: 34927.1 Da PI: 8.3187

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do028959.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	154.2	5.7e-48	28	159	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 pGfrFhPtd+el+ +yL++kve+k +++ ++ike+diyk++PwdLp+ a++k+wyfF+ r +ky+++ r+nr+t sg+Wkatg dk++++ Do028959.1 28 FPGFRFHPTDQELLGFYLARKVEKKGFSI-DIIKEIDIYKHDPWDLPNearhvVPGAGDKDWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDKPIHDG 125 69*************************.99***********6355443334999*********************************98 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +ge glkk+Lv+y+g+a +g+ktdW+mhe+rl Do028959.1 126 aGGECLGLKKSLVYYSGSAGRGTKTDWMMHEFRL 159 78888*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.27E-53	27	183	IPR003441	NAC domain
PROSITE profile	PS51005	52.959	27	183	IPR003441	NAC domain
Pfam	PF02365	5.7E-24	29	159	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MEEKKPLEKI KESGGEAEIG NEEDDLVFPG FRFHPTDQEL LGFYLARKVE KKGFSIDIIK 60 EIDIYKHDPW DLPNEARHVV PGAGDKDWYF FCLRGRKYRN SIRPNRVTGS GFWKATGIDK 120 PIHDGAGGEC LGLKKSLVYY SGSAGRGTKT DWMMHEFRLP STTSSSADLQ DAEIWTICRI 180 FKRNMTYNRR CQQQPKQEHD NKRNHQQQQL QYYYDYRYHQ HQHRASMTSS FDSSQASKAY 240 ATDHHQPFLL HGFHGVSSAI ATTATTPSGL MRAPPPPSSL GWTDLTTFRG SSGNTWDELG 300 RIMEI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-50	29	184	19	166	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-50	29	184	19	166	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-50	29	184	19	166	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-50	29	184	19	166	NO APICAL MERISTEM PROTEIN
3swm_A	1e-50	29	184	22	169	NAC domain-containing protein 19
3swm_B	1e-50	29	184	22	169	NAC domain-containing protein 19
3swm_C	1e-50	29	184	22	169	NAC domain-containing protein 19
3swm_D	1e-50	29	184	22	169	NAC domain-containing protein 19
3swp_A	1e-50	29	184	22	169	NAC domain-containing protein 19
3swp_B	1e-50	29	184	22	169	NAC domain-containing protein 19
3swp_C	1e-50	29	184	22	169	NAC domain-containing protein 19
3swp_D	1e-50	29	184	22	169	NAC domain-containing protein 19
4dul_A	1e-50	29	184	19	166	NAC domain-containing protein 19
4dul_B	1e-50	29	184	19	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do028959.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF282870	2e-53	JF282870.1 Panicum virgatum clone F12_PVCAG-3 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025809001.1	1e-153	transcription factor JUNGBRUNNEN 1-like
Swissprot	Q9SK55	4e-81	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A1E5WKN5	0.0	A0A1E5WKN5_9POAL; Transcription factor JUNGBRUNNEN 1
STRING	Pavir.Ca02638.1.p	1e-168	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1191	38	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	6e-83	NAC domain containing protein 42

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]