PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do028914.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

NAC

Protein Properties

Length: 371aa MW: 40013.7 Da PI: 6.9964

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do028914.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174.2	3.7e-54	22	147	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhPtdeel+++yL++k+++ ++ +++ e+d++k+ePwdLp++++ +ekewyfF+ +d+ky+tg r+nrat+sgyWkatgkd+e+++ +++l Do028914.1 22 LPPGFRFHPTDEELITHYLARKAADPRFAP-RAVGEADLNKCEPWDLPARATMGEKEWYFFCVKDRKYPTGLRTNRATESGYWKATGKDREIFR-GKTL 118 79***********************888.88***********998999*************************************.999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg+kktLvfy+grap+g kt Wvmheyrl Do028914.1 119 VGMKKTLVFYTGRAPRGGKTGWVMHEYRL 147 ***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.67E-65	13	181	IPR003441	NAC domain
PROSITE profile	PS51005	58.973	22	181	IPR003441	NAC domain
Pfam	PF02365	1.1E-29	23	147	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MEHDVHHHRH QQLQQQQEAM ELPPGFRFHP TDEELITHYL ARKAADPRFA PRAVGEADLN 60 KCEPWDLPAR ATMGEKEWYF FCVKDRKYPT GLRTNRATES GYWKATGKDR EIFRGKTLVG 120 MKKTLVFYTG RAPRGGKTGW VMHEYRLDGK HATGGGSSLL FPSIRAGASK DEWVLCRVFK 180 KSIEPPLAAG GKRSSGAFMG VADMGPSMFM ADDLAACALP PLMDVSGGSG ASAMSLSAAA 240 AAAAIELPSP AQHVTCFSNA LEGQFLNPPF PLPSAGPAAA QGAADHLATA ASASPFLASM 300 MQTQYDGGAA GVNGMVHELL QEGGGWYSKL GERERLSGGA SQDTXLTSEV NPXEISSSRQ 360 LMDHEASFWG Y

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MEHDVHHHRH QQLQQQQEAM ELPPGFRFHP TDEELITHYL ARKAADPRFA PRAVGEADLN  60
KCEPWDLPAR ATMGEKEWYF FCVKDRKYPT GLRTNRATES GYWKATGKDR EIFRGKTLVG  120
MKKTLVFYTG RAPRGGKTGW VMHEYRLDGK HATGGGSSLL FPSIRAGASK DEWVLCRVFK  180
KSIEPPLAAG GKRSSGAFMG VADMGPSMFM ADDLAACALP PLMDVSGGSG ASAMSLSAAA  240
AAAAIELPSP AQHVTCFSNA LEGQFLNPPF PLPSAGPAAA QGAADHLATA ASASPFLASM  300
MQTQYDGGAA GVNGMVHELL QEGGGWYSKL GERERLSGGA SQDTXLTSEV NPXEISSSRQ  360
LMDHEASFWG Y

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-57	20	181	15	165	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-57	20	181	15	165	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-57	20	181	15	165	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-57	20	181	15	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-56	20	181	18	168	NAC domain-containing protein 19
3swm_B	1e-56	20	181	18	168	NAC domain-containing protein 19
3swm_C	1e-56	20	181	18	168	NAC domain-containing protein 19
3swm_D	1e-56	20	181	18	168	NAC domain-containing protein 19
3swp_A	1e-56	20	181	18	168	NAC domain-containing protein 19
3swp_B	1e-56	20	181	18	168	NAC domain-containing protein 19
3swp_C	1e-56	20	181	18	168	NAC domain-containing protein 19
3swp_D	1e-56	20	181	18	168	NAC domain-containing protein 19
4dul_A	8e-57	20	181	15	165	NAC domain-containing protein 19
4dul_B	8e-57	20	181	15	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do028914.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT065898	0.0	BT065898.1 Zea mays full-length cDNA clone ZM_BFb0063K15 mRNA, complete cds.
GenBank	KJ728021	0.0	KJ728021.1 Zea mays clone pUT6157 NAC transcription factor (NAC40) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004952889.1	0.0	NAC domain-containing protein 92
Refseq	XP_022679460.1	0.0	NAC domain-containing protein 92
Swissprot	Q9FLJ2	2e-85	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A1E5UMR6	0.0	A0A1E5UMR6_9POAL; NAC domain-containing protein 100
STRING	Si017567m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2730	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	5e-84	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]