PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do028605.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | NAC | ||||||||
Protein Properties | Length: 49aa MW: 5440.5 Da PI: 8.7948 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 35.8 | 2.4e-11 | 1 | 40 | 1 | 41 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiyk 41 lp GfrF+Ptdeel+ +yL++k+ + +l++ +i+++d+ + Do028605.1 1 LPIGFRFRPTDEELLLHYLRRKALACPLPA-GIIPDADLAR 40 799************************999.89*9999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-13 | 1 | 41 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 15.113 | 1 | 49 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.9E-7 | 2 | 24 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 49 aa Download sequence Send to blast |
LPIGFRFRPT DEELLLHYLR RKALACPLPA GIIPDADLAR LPSLKTPCA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do028605.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU969970 | 1e-47 | EU969970.1 Zea mays clone 337945 NAC domain-containing protein 68 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001151274.1 | 8e-20 | uncharacterized protein LOC100284907 | ||||
Refseq | XP_002456878.1 | 8e-20 | NAC domain-containing protein 83 | ||||
Refseq | XP_004971124.1 | 1e-19 | NAC domain-containing protein 83-like isoform X1 | ||||
Refseq | XP_004971125.1 | 1e-19 | NAC domain-containing protein 83-like isoform X2 | ||||
Refseq | XP_004971126.1 | 1e-19 | NAC domain-containing protein 83-like isoform X3 | ||||
TrEMBL | A0A1E5V5B7 | 8e-26 | A0A1E5V5B7_9POAL; Uncharacterized protein (Fragment) | ||||
STRING | Pavir.Eb03721.1.p | 3e-19 | (Panicum virgatum) | ||||
STRING | Sb03g044440.1 | 3e-19 | (Sorghum bicolor) | ||||
STRING | GRMZM2G134073_P01 | 3e-19 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14000.1 | 8e-14 | NAC domain containing protein 84 |