 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Do028575.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
| Family |
GRAS |
| Protein Properties |
Length: 565aa MW: 59837.2 Da PI: 4.8449 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Do028575.1 | genome | Dichan | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 303.4 | 5.5e-93 | 126 | 517 | 1 | 373 |
GRAS 1 lvelLlecAeavss..gdlelaqalLarlselaspdgd.....pmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalklfsevs 88
l +lL+++Aea+s ++ ela+ +L rl++++s +gd +m+Rla++ft AL+ l +s + +a ++ +++++ + ++l+a+++++++s
Do028575.1 126 LLHLLMAAAEALSGphKSRELARVILVRLKQMVSHTGDnaavsNMERLATHFTDALQGLLDGSHPVGGAARQAAAAASHGlhqhTGDVLTAFQMLQDMS 224
579**********8557777*****************8899999******************776655555555554433556689999********** PP
GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
P++kf+h+taNqaIleav+g++rvH++D+di +G+QW++L+qa+ sRp +pp+lRiT+v+++ g +++++e g+rLa fA+++g pf+f ++
Do028575.1 225 PYMKFGHFTANQAILEAVAGDRRVHVVDYDIAEGVQWASLMQAMISRPdgVPPPHLRITAVSRSGGGGARAVQEAGRRLAAFAASIGQPFSFGQCRLDS 323
************************************************777799*********7777***************************9999* PP
GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nse......sFlerflealeyysalfdsleaklpr 277
e +++ + r+ +gE+++ n+vl+ + ++L + +l +kvv+vve++ + + F++rf+e l+ ysa+ dslea++p+
Do028575.1 324 AERFRPATVRMVKGETVVANCVLNQAAATTTIRRPTGSVASFLAGMATLGAKVVTVVEEDQGEpE-KddeeagGFVARFMEELHRYSAVWDSLEAGFPT 421
***********************877776443333347889******************954422.22344459************************* PP
GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees.gslvlgWkdrpLvsvSaW 373
+s+ r vEr++l+++i +v+ + ++ + e + W e+++ GF++vpls ++ qa+lll ++ dgy+++e s + +vlgWk ++L+s+S+W
Do028575.1 422 QSRVRGLVERAILAPNIAGAVSRAYRAVDGDGEARAGWGEWMRGNGFRAVPLSCFNHHQARLLLGLFN-DGYTMDETSpNKIVLGWKAQRLLSASVW 517
********************************************************************.******88526777************** PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 565 aa
Download sequence Send
to blast |
MDVTMDDVTG ELEFSGCSST TTSSSSPSLD DGMGMYAWNG LSPVADWGSL CPDDGGQDLH 60
GLIESMLCDD TLVGAADLHP AMFPDEVYCC SNGSAPSSTT TTNPGTPVNE GDAQAQGDGP 120
EKGLRLLHLL MAAAEALSGP HKSRELARVI LVRLKQMVSH TGDNAAVSNM ERLATHFTDA 180
LQGLLDGSHP VGGAARQAAA AASHGLHQHT GDVLTAFQML QDMSPYMKFG HFTANQAILE 240
AVAGDRRVHV VDYDIAEGVQ WASLMQAMIS RPDGVPPPHL RITAVSRSGG GGARAVQEAG 300
RRLAAFAASI GQPFSFGQCR LDSAERFRPA TVRMVKGETV VANCVLNQAA ATTTIRRPTG 360
SVASFLAGMA TLGAKVVTVV EEDQGEPEKD DEEAGGFVAR FMEELHRYSA VWDSLEAGFP 420
TQSRVRGLVE RAILAPNIAG AVSRAYRAVD GDGEARAGWG EWMRGNGFRA VPLSCFNHHQ 480
ARLLLGLFND GYTMDETSPN KIVLGWKAQR LLSASVWSPP PLSVPSSPTE EAFQPVGIAP 540
GSGGVGRLEF DYIDSFLVEP AYALV
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC243229 | 0.0 | AC243229.1 Panicum virgatum clone PV_ABa011-H05, complete sequence. |
