PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do028293.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 413aa    MW: 43954.7 Da    PI: 6.8421
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do028293.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.98.9e-28160219259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES.--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYeg.eHnhe 59 
                  D ++WrKYGqK++kgs++pr+YYrC++  +C+++k+ver+++dp ++++tY+g +H h+
  Do028293.1 160 ADLWAWRKYGQKPIKGSPYPRGYYRCSTDkDCKARKQVERCRTDPATLIVTYTGgDHSHP 219
                 599***********************9998**********************95389997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-28156221IPR003657WRKY domain
SuperFamilySSF1182903.53E-23158221IPR003657WRKY domain
SMARTSM007746.9E-32159220IPR003657WRKY domain
PROSITE profilePS5081128.392161221IPR003657WRKY domain
PfamPF031061.8E-22161219IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MDGDLGWRSS SGSNNWDLHA VVRFACSGGG RVAPSSSSND SFSWLHTPSA SEDSSTGLPP  60
SQPQTDQLMD AAASQPLLTN PAVDDLCLQA FFASPKPETP QPSSPRNKAQ TQPSPADGPP  120
GKPRTSGRVG GGGPTRSKRK GKKSQVNKEV TRVPVGGPPA DLWAWRKYGQ KPIKGSPYPR  180
GYYRCSTDKD CKARKQVERC RTDPATLIVT YTGGDHSHPV PLHRNSLAGT TRNKTQPPSA  240
AEEAPKPAPA LSASATESPG LSPSTPLRSP FLGVEYKDEE DDDAVPSRLL LEGTEMEGED  300
DVMLYLMSEE TAPGIGNGIG CEDVVLFPKP DEPPPTTSTS RTDGGAEAAP VMNIGEEKLS  360
RASRHGRLHR WQRRAAGADL SVYLDHHEQY AVNHGLFAAG PCISAVCTSN SVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-16148221679Disease resistance protein RRS1
5w3x_D3e-16148221679Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo028293.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0686092e-72BT068609.2 Zea mays full-length cDNA clone ZM_BFb0349G13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812935.11e-177WRKY transcription factor 22-like
TrEMBLA0A1E5VAE70.0A0A1E5VAE7_9POAL; WRKY transcription factor 22
STRINGSi008820m1e-166(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125622536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.15e-42WRKY family protein