PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do028246.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 431aa    MW: 49331.1 Da    PI: 5.5852
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do028246.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY292.1e-093734171758
                 T-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
        WRKY  17 gsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                 +se    YYrC ++   gC ++k+ ++s+edp++++++Y g+H++
  Do028246.1 373 NSESKMYYYRCIHRnsqGCVATKEAQCSDEDPTLFDVVYYGTHTC 417
                 6777788****9988889*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011572.4E-945285IPR013181Protein of unknown function DUF1719
PfamPF082241.4E-8175285IPR013181Protein of unknown function DUF1719
SMARTSM007742.0E-7367419IPR003657WRKY domain
SuperFamilySSF1182902.75E-9372417IPR003657WRKY domain
PfamPF031061.1E-9372417IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.7E-9372418IPR003657WRKY domain
PROSITE profilePS508119.305380415IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MAELMSSAII GEAVNRIISS HIGQDEVKYQ DRENIERLEM AHIKMEAALQ MSNRWPITDV  60
PLLRWRSKLK RASQECDEAL RRFERFAAGA TEFLKYVEFG GTPREYMFFN PLIGHLLTGK  120
SMRYQAFQES KYYYLGIRPM SFAEPGMEVI IGFLCHDFKE PTKGFNLGFI LRISESTDIF  180
NDIIKCMQSV TPHFKFAAEA VKRELIQLPT QDFSWVTQSP YGENGLWVNV HHTLTHLSRP  240
NPLCCNEHED YLVPSNNRNG MVPSSRLLSN TFPEEVIIVL LQCQVSLCDQ QRYSMGSASE  300
HGGTSYRNCD MPPLKLGVLF IPHDSPEDIE PPAESYVLEV IDETKQEMLH NNVGLQYLDE  360
KLLPKAIDYL YQNSESKMYY YRCIHRNSQG CVATKEAQCS DEDPTLFDVV YYGTHTCVQI  420
TGGATVSFSS R
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo028246.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022679863.11e-175uncharacterized protein LOC111256307
TrEMBLA0A1E5WNB50.0A0A1E5WNB5_9POAL; Uncharacterized protein
STRINGSi029566m1e-173(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.13e-12WRKY DNA-binding protein 46