PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do028069.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | WRKY | ||||||||
Protein Properties | Length: 139aa MW: 15185.8 Da PI: 7.4593 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 75.3 | 7.3e-24 | 2 | 62 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +Dg+ WrKYGqKe+++s++prs YrCt++ gC++k++v+ ++ dp+ +itY g+H+++ Do028069.1 2 EDGHVWRKYGQKEIQNSKHPRSNYRCTHKsdqGCSAKRQVQICEADPSKYVITYYGKHTCR 62 8***************************99999**************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00774 | 1.9E-31 | 1 | 63 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.873 | 1 | 64 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.05E-23 | 2 | 64 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.3E-25 | 2 | 64 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-23 | 2 | 62 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
LEDGHVWRKY GQKEIQNSKH PRSNYRCTHK SDQGCSAKRQ VQICEADPSK YVITYYGKHT 60 CRDPATIPLV VPATGEAHDD RTDNLISFTP NSFTANAAAI TAGASSSRLL NLEASATQLS 120 STSWCPSDDV FSSLAGSFM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 2e-27 | 1 | 62 | 8 | 69 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do028069.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004984467.1 | 2e-65 | probable WRKY transcription factor 70 isoform X1 | ||||
Refseq | XP_004984468.1 | 2e-65 | probable WRKY transcription factor 70 isoform X2 | ||||
TrEMBL | A0A1E5VE57 | 1e-100 | A0A1E5VE57_9POAL; Uncharacterized protein (Fragment) | ||||
STRING | Si036565m | 7e-65 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7656 | 35 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56400.1 | 1e-23 | WRKY DNA-binding protein 70 |