PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do028032.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | Nin-like | ||||||||
Protein Properties | Length: 240aa MW: 27814.8 Da PI: 6.3703 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 89.3 | 3e-28 | 111 | 161 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 e +++e +s+yF++pi +AA+eL+v+lT+LK++CRq+GI+RWPhRk+ksl Do028032.1 111 ETALTFELVSQYFYMPIMQAARELNVGLTLLKKRCRQLGIPRWPHRKMKSL 161 6789*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 18.963 | 99 | 181 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.5E-22 | 114 | 161 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0051302 | Biological Process | regulation of cell division |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
LWPYWTGAWP DSYLLEEEAF LSSLSFPSLH FQPSCSTAIA PSNILQDELD AIFKDDVLKH 60 WDEMEQQADS KIDDGHNRLP LLCYGEEKEV SDNSDARVVV RAAEQRARPE ETALTFELVS 120 QYFYMPIMQA ARELNVGLTL LKKRCRQLGI PRWPHRKMKS LQSLINNVQV LQEAGKAAGE 180 EQLRAVVEML QQEKQLLEQR PYVQLEEKTK RLRQACFKAN YKKRRLLALE AGEAPRIHNY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do028032.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003509 | 2e-46 | AP003509.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0525F01. | |||
GenBank | AP003569 | 2e-46 | AP003569.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0425F05. | |||
GenBank | AP014962 | 2e-46 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004966836.1 | 1e-142 | protein RKD2 | ||||
TrEMBL | A0A1E5W6J3 | 1e-177 | A0A1E5W6J3_9POAL; Protein RKD1 (Fragment) | ||||
STRING | Pavir.Da01160.1.p | 1e-133 | (Panicum virgatum) | ||||
STRING | Si008273m | 1e-141 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4590 | 33 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18790.1 | 6e-39 | RWP-RK domain-containing protein |