PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do027844.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | G2-like | ||||||||
Protein Properties | Length: 241aa MW: 26826.1 Da PI: 8.9816 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 98.4 | 4.9e-31 | 18 | 71 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+eLH++Fveave LGG+++AtPk+il+lm+vkg++++h+kSHLQ+YR+ Do027844.1 18 PRMRWTEELHRQFVEAVECLGGQDEATPKRILQLMGVKGISISHIKSHLQMYRS 71 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-29 | 14 | 72 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.432 | 14 | 74 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.2E-17 | 16 | 73 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.0E-25 | 18 | 71 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.5E-9 | 19 | 70 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MRGFERKGVR QYNRSEAPRM RWTEELHRQF VEAVECLGGQ DEATPKRILQ LMGVKGISIS 60 HIKSHLQMYR SSSNSSTHQS SLQKSTSTSN SKRVFLNRKD HCMYASPDGN TPASDKNIYA 120 MLRGCSRSSP YQIPPSLQEV FRSWEQSRGR VPWNSNLLTT EKAVRPSHTT SNKKSEKQTG 180 CDLTLSIGVW EDASSDADGS STISEELPAP AVGARCVATV KEEESMPALN LDLTISSSWL 240 A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-16 | 19 | 72 | 4 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-16 | 19 | 72 | 4 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 9e-17 | 19 | 72 | 3 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 9e-17 | 19 | 72 | 3 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 9e-17 | 19 | 72 | 3 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 9e-17 | 19 | 72 | 3 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-16 | 19 | 72 | 4 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-16 | 19 | 72 | 4 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-16 | 19 | 72 | 4 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-16 | 19 | 72 | 4 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-16 | 19 | 72 | 4 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-16 | 19 | 72 | 4 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do027844.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004966301.1 | 1e-152 | uncharacterized protein LOC101769616 | ||||
TrEMBL | A0A1E5VP04 | 1e-179 | A0A1E5VP04_9POAL; Uncharacterized protein | ||||
STRING | Si007179m | 1e-152 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5493 | 37 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02060.1 | 9e-26 | G2-like family protein |