PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do027688.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 333aa    MW: 36890.2 Da    PI: 6.4568
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do027688.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM150.58.1e-4741361128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k....kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                 lp+GfrF Ptdeel+++yL++k+ + +++   +i+ vd+yk+ePwdLp +    ++ +++  e yfF++r +ky++g r++rat++gyWk+tgkdk+v+
  Do027688.1   4 LPAGFRFFPTDEELITCYLARKAMDASFTS-PAIRGVDLYKTEPWDLPcEqqpaEAGGGDLhEGYFFCTRGSKYPSGVRARRATRRGYWKSTGKDKAVH 101
                 799************************999.78**************95345442222333477*********************************** PP

         NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                  ++g++vg++ktLvfy grap+gekt Wvmhey++
  Do027688.1 102 GRDGRVVGTRKTLVFYGGRAPRGEKTGWVMHEYAM 136
                 *********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-523160IPR003441NAC domain
PROSITE profilePS5100552.0054160IPR003441NAC domain
PfamPF023653.5E-255135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEVLPAGFRF FPTDEELITC YLARKAMDAS FTSPAIRGVD LYKTEPWDLP CEQQPAEAGG  60
GDLHEGYFFC TRGSKYPSGV RARRATRRGY WKSTGKDKAV HGRDGRVVGT RKTLVFYGGR  120
APRGEKTGWV MHEYAMGERS SSALLRGAQS EWVICKVFMR KHPTSDDRKL TTEETVHDQD  180
STPGHLPPMV PDGCGSEQEA AAAPPVVTDS RHTVSHSGAH AMDGNEKDHH HRHQMVQELL  240
VINHHGSSCA SPSLFNRDDQ LRAHCSALPI MQMQSDDADY YLPELLEYNS CDDLTNAGLG  300
LLDTGAEVNR RAEITTAAVG PLHLDGLYWN FGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-40416215170Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo027688.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683498.11e-166NAC domain-containing protein 100
TrEMBLA0A1E5UJH10.0A0A1E5UJH1_9POAL; NAC domain-containing protein 100
STRINGPavir.J11705.1.p1e-177(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147652122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.22e-59Arabidopsis NAC domain containing protein 87