PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do027424.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

G2-like

Protein Properties

Length: 368aa MW: 40326.5 Da PI: 7.4152

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do027424.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	38	3.6e-12	45	70	1	26
G2-like 1 kprlrWtpeLHerFveaveqLGGsek 26 ++rlrWt+eLH+rFveav+qLGG++ Do027424.1 45 RQRLRWTNELHDRFVEAVTQLGGPDS 70 58*********************985 PP
2	G2-like	38.8	2e-12	106	139	26	54
G2-like 26 kAtPktilelmkvkgLtlehvkSHLQ.....kYR 54 AtPk +l++m+v+gLt++hvkSHLQ kYR Do027424.1 106 GATPKGVLRIMGVPGLTIYHVKSHLQvillsKYR 139 59************************55555565 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.5E-25	45	70	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.8E-8	46	70	IPR006447	Myb domain, plants
SuperFamily	SSF46689	6.45E-5	98	134	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.6E-8	106	134	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	1.5E-25	107	141	IPR009057	Homeodomain-like
Pfam	PF14379	2.3E-9	172	193	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain
Pfam	PF14379	1.1E-9	216	242	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MYQPNTVSSL GPTQSNPSSH NQMGPGDGAM APHNGGNNSP NMAGRQRLRW TNELHDRFVE 60 AVTQLGGPDS PIVSVLFKKT IRKSVLVTVI LGSFICLLYN YLNVTGATPK GVLRIMGVPG 120 LTIYHVKSHL QVILLSKYRL AKYIPDPSAD DNKAEKKDPG DLLAALEGSS TMQISEALKL 180 QMEVQKRLHE QLEASLMMSW ISLEFNMGYD TDKHPLQVQR QLQLRIEAQG KYLQKIIEEQ 240 QRITSAGASR ATSSEQLPAS ERTNPSTPVP TSESPLQAVP FSKDNGKRVE PIESASHDDL 300 PRGEPLTPDS NCRPGSPTLS PKHEHPAKRQ RGSSDGTPIA DGDFALPHIF ESSTGSEFQQ 360 CSMPYSSH

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MYQPNTVSSL GPTQSNPSSH NQMGPGDGAM APHNGGNNSP NMAGRQRLRW TNELHDRFVE  60
AVTQLGGPDS PIVSVLFKKT IRKSVLVTVI LGSFICLLYN YLNVTGATPK GVLRIMGVPG  120
LTIYHVKSHL QVILLSKYRL AKYIPDPSAD DNKAEKKDPG DLLAALEGSS TMQISEALKL  180
QMEVQKRLHE QLEASLMMSW ISLEFNMGYD TDKHPLQVQR QLQLRIEAQG KYLQKIIEEQ  240
QRITSAGASR ATSSEQLPAS ERTNPSTPVP TSESPLQAVP FSKDNGKRVE PIESASHDDL  300
PRGEPLTPDS NCRPGSPTLS PKHEHPAKRQ RGSSDGTPIA DGDFALPHIF ESSTGSEFQQ  360
CSMPYSSH

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00252	DAP	Transfer from AT2G01060	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do027424.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004973261.1	0.0	myb family transcription factor PHL7
TrEMBL	A0A1E5WGW8	0.0	A0A1E5WGW8_9POAL; Myb family transcription factor PHL7
STRING	Si014152m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2220	38	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-78	G2-like family protein