PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do027207.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 232aa    MW: 24366.3 Da    PI: 4.4607
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do027207.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.9e-184087152
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52
                + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++aa++ 
  Do027207.1 40 PSYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAAALV 87
                57*****998.**********843...6*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-124087IPR001471AP2/ERF domain
CDDcd000181.25E-194099No hitNo description
SuperFamilySSF541713.6E-214198IPR016177DNA-binding domain
PROSITE profilePS5103223.0374198IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-3141100IPR001471AP2/ERF domain
SMARTSM003805.7E-3541104IPR001471AP2/ERF domain
PRINTSPR003673.1E-104253IPR001471AP2/ERF domain
PRINTSPR003673.1E-106480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MTDGGEVSSP ASSGGTPPQS PAEAEPRRGE KRARDGGKHP SYRGVRMRAW GKWVSEIREP  60
RKKSRIWLGT FPTPEMAARA HDAAALVVKG PAAVLNFPEM ATALPRPASA APQDVQAAAA  120
RAAAMEPPPM PVPPGAPVAA LPTSSPAPVA GQQQDDDLEA IVELPLLDDD PAELVTLGTM  180
SFAAQASWCD PEWIDDAGAG YMAAAHDDEL FGLWPDGDHG WAQSVGALLW NL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-183699973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo027207.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269401e-87KJ726940.1 Zea mays clone pUT3486 AP2-EREBP transcription factor (EREB144) mRNA, partial cds.
GenBankKJ7276671e-87KJ727667.1 Zea mays clone pUT5594 AP2-EREBP transcription factor (EREB191) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951388.11e-105ethylene-responsive transcription factor ERF038
SwissprotQ9LYD38e-50DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A1E5UQ321e-162A0A1E5UQ32_9POAL; Dehydration-responsive element-binding protein 3
STRINGSi018222m1e-104(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.13e-35ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]